txid175774[Organism:noexp] - GEO DataSets - NCBI

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Items: 11

Select item 2001085971.

RNA-Seq provides insight to the body size evolution from comparative analyses of three Asia Sisoridae catfish

(Submitter supplied) We sampled three catfishes from the Mekong River that belonging to the same Asia Sisoridae family but possessing extremely body size variations. We used RNA-Seq to compare the gene expression and sequence differences of these three sympatric species at their relatively early lives to search the possible genetic clues that equally response to growth. We found two crucial growth related candidate genes (AKT3 and SH2B1) were consistently up-regulated in BY when compared with both GM and OS at brain, liver and muscle respectively. more...

Organism:: Glyptothorax macromaculatus; Bagarius yarrelli; Oreoglanis setiger

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL24448 GPL24449 GPL24450
27 Samples

Download data: TXT

Series

Accession:: GSE108597

ID:: 200108597

SRA Run Selector

Select item 1000244482.

Illumina HiSeq 2500 (Bagarius yarrelli)

Organism:: Bagarius yarrelli

1 Series
9 Samples

Platform

Accession:: GPL24448

ID:: 100024448

Select item 3029057543.

RNA_Seq_BY_3_3_Brain

Organism:: Bagarius yarrelli

Source name:: Brain removed from fresh sample and frozen immediately in liquid nitrogen

Platform:: GPL24448
Series:: GSE108597

Sample

Accession:: GSM2905754

ID:: 302905754

SRA Run Selector

Select item 3029057534.

RNA_Seq_BY_3_2_Muscle

Organism:: Bagarius yarrelli

Source name:: Muscle removed from fresh sample and frozen immediately in liquid nitrogen

Platform:: GPL24448
Series:: GSE108597

Sample

Accession:: GSM2905753

ID:: 302905753

SRA Run Selector

Select item 3029057525.

RNA_Seq_BY_3_1_Liver

Organism:: Bagarius yarrelli

Source name:: Liver removed from fresh sample and frozen immediately in liquid nitrogen

Platform:: GPL24448
Series:: GSE108597

Sample

Accession:: GSM2905752

ID:: 302905752

SRA Run Selector

Select item 3029057516.

RNA_Seq_BY_2_3_Brain

Organism:: Bagarius yarrelli

Source name:: Brain removed from fresh sample and frozen immediately in liquid nitrogen

Platform:: GPL24448
Series:: GSE108597

Sample

Accession:: GSM2905751

ID:: 302905751

SRA Run Selector

Select item 3029057507.

RNA_Seq_BY_2_2_Muscle

Organism:: Bagarius yarrelli

Source name:: Muscle removed from fresh sample and frozen immediately in liquid nitrogen

Platform:: GPL24448
Series:: GSE108597

Sample

Accession:: GSM2905750

ID:: 302905750

SRA Run Selector

Select item 3029057498.

RNA_Seq_BY_2_1_Liver

Organism:: Bagarius yarrelli

Source name:: Liver removed from fresh sample and frozen immediately in liquid nitrogen

Platform:: GPL24448
Series:: GSE108597

Sample

Accession:: GSM2905749

ID:: 302905749

SRA Run Selector

Select item 3029057489.

RNA_Seq_BY_1_3_Brain

Organism:: Bagarius yarrelli

Source name:: Brain removed from fresh sample and frozen immediately in liquid nitrogen

Platform:: GPL24448
Series:: GSE108597

Sample

Accession:: GSM2905748

ID:: 302905748

SRA Run Selector

Select item 30290574710.

RNA_Seq_BY_1_2_Muscle

Organism:: Bagarius yarrelli

Source name:: Muscle removed from fresh sample and frozen immediately in liquid nitrogen

Platform:: GPL24448
Series:: GSE108597

Sample

Accession:: GSM2905747

ID:: 302905747

SRA Run Selector

Select item 30290574611.

RNA_Seq_BY_1_1_Liver

Organism:: Bagarius yarrelli

Source name:: Liver removed from fresh sample and frozen immediately in liquid nitrogen

Platform:: GPL24448
Series:: GSE108597

Sample

Accession:: GSM2905746

ID:: 302905746

SRA Run Selector

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