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Items: 1 to 20 of 49

1.

Genome-wide distribution of 5-hydroxymethyluracil and chromatin accessibility in the Breviolum minutum genome

(Submitter supplied) In dinoflagellates, the most unique and divergent nuclear organization among the known diversity of eukaryotes has evolved. The list of highly unusual features of dinoflagellate nuclei and genomes is long -- permanently condensed liquid crystalline chromosomes, in which histones are not the main packaging component, genes organized as very long unidirectional gene arrays, general absence of transcriptional regulation, high abundance of the otherwise very rare DNA modification 5-hydroxymethyluracil (5-hmU), and many others. more...
Organism:
Homo sapiens; Bigelowiella natans; Breviolum minutum; Candida albicans; Saccharomyces cerevisiae
Type:
Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other
4 related Platforms
34 Samples
Download data: BEDGRAPH, BIGWIG
Series
Accession:
GSE241969
ID:
200241969

2.

Transcription-dependent domain-scale 3D genome organization in dinoflagellates

(Submitter supplied) Dinoflagellate chromosomes represent a unique evolutionary experiment, as they exist in a permanently condensed, liquid crystalline state, are not packaged by histones, and contain genes organized into polycistronic arrays, with minimal transcriptional regulation. We analyze the 3D genome of {Breviolum minutum}, and find large topological domains without chromatin loops, demarcated by convergent gene array boundaries (``dinoTADs’’). more...
Organism:
Breviolum minutum
Type:
Other
Platform:
GPL28838
35 Samples
Download data: HIC
Series
Accession:
GSE153950
ID:
200153950

SRA Run Selector

3.

NextSeq 550 (Breviolum minutum; Homo sapiens)

Organism:
Homo sapiens; Breviolum minutum
1 Series
4 Samples
Download data
Platform
Accession:
GPL33722
ID:
100033722

4.

NextSeq 550 (Breviolum minutum)

Organism:
Breviolum minutum
1 Series
5 Samples
Download data
Platform
Accession:
GPL33721
ID:
100033721

5.

Illumina NextSeq 500 (Breviolum minutum)

Organism:
Breviolum minutum
1 Series
35 Samples
Download data
Platform
Accession:
GPL28838
ID:
100028838

6.

L529-dhmU-MeDIP

Organism:
Homo sapiens; Breviolum minutum
Source name:
L529-dhmU-MeDIP
Platform:
GPL33722
Series:
GSE241969
Download data: BIGWIG
Sample
Accession:
GSM7746908
ID:
307746908

SRA Run Selector

7.

L528-IgG

Organism:
Homo sapiens; Breviolum minutum
Source name:
L528-IgG
Platform:
GPL33722
Series:
GSE241969
Download data: BIGWIG
Sample
Accession:
GSM7746907
ID:
307746907

SRA Run Selector

8.

L527-Depleted

Organism:
Homo sapiens; Breviolum minutum
Source name:
L527-Depleted
Platform:
GPL33722
Series:
GSE241969
Download data: BIGWIG
Sample
Accession:
GSM7746906
ID:
307746906

SRA Run Selector

9.

L526-Input

Organism:
Homo sapiens; Breviolum minutum
Source name:
L526-Input
Platform:
GPL33722
Series:
GSE241969
Download data: BIGWIG
Sample
Accession:
GSM7746905
ID:
307746905

SRA Run Selector

10.

L571-5hmU_chemical_mapping_harsh_oxid

Organism:
Breviolum minutum
Source name:
L571-5hmU_chemical_mapping_harsh_oxid
Platform:
GPL33721
Series:
GSE241969
Download data: BIGWIG
Sample
Accession:
GSM7746910
ID:
307746910

SRA Run Selector

11.

L570-5hmU_chemical_mapping_mild_oxid

Organism:
Breviolum minutum
Source name:
L570-5hmU_chemical_mapping_mild_oxid
Platform:
GPL33721
Series:
GSE241969
Download data: BIGWIG
Sample
Accession:
GSM7746909
ID:
307746909

SRA Run Selector

12.

L498-dhmU-Depleted

Organism:
Breviolum minutum
Source name:
L498-dhmU-Depleted
Platform:
GPL33721
Series:
GSE241969
Download data: BIGWIG
Sample
Accession:
GSM7746904
ID:
307746904

SRA Run Selector

13.

L497-dhmU-MeDIP

Organism:
Breviolum minutum
Source name:
L497-dhmU-MeDIP
Platform:
GPL33721
Series:
GSE241969
Download data: BIGWIG
Sample
Accession:
GSM7746903
ID:
307746903

SRA Run Selector

14.

L08_Symbiodinium_minutum_SSb01_omniATAC

Organism:
Breviolum minutum
Source name:
L08_Symbiodinium_minutum_SSb01_omniATAC
Platform:
GPL33721
Series:
GSE241969
Download data: BIGWIG
Sample
Accession:
GSM7746898
ID:
307746898

SRA Run Selector

15.

L1866-Triptolide_time_course_96h_washout_high_dose_Hi-C

Organism:
Breviolum minutum
Source name:
L1866-Triptolide_time_course_96h_washout_high_dose_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173893
ID:
305173893

SRA Run Selector

16.

L1865-Amanitin_time_course_96h_washout_high_dose_Hi-C

Organism:
Breviolum minutum
Source name:
L1865-Amanitin_time_course_96h_washout_high_dose_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173892
ID:
305173892

SRA Run Selector

17.

L1864-NT_time_course_96h_washout_Hi-C

Organism:
Breviolum minutum
Source name:
L1864-NT_time_course_96h_washout_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173891
ID:
305173891

SRA Run Selector

18.

L1863-Triptolide_time_course_48h_high_dose_Hi-C

Organism:
Breviolum minutum
Source name:
L1863-Triptolide_time_course_48h_high_dose_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173890
ID:
305173890

SRA Run Selector

19.

L1862-Amanitin_time_course_48h_high_dose_Hi-C

Organism:
Breviolum minutum
Source name:
L1862-Amanitin_time_course_48h_high_dose_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173889
ID:
305173889

SRA Run Selector

20.

L1861-NT_time_course_48h_Hi-C

Organism:
Breviolum minutum
Source name:
L1861-NT_time_course_48h_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173888
ID:
305173888

SRA Run Selector

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