txid290400[Organism:noexp] - GEO DataSets

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Items: 2

Select item 2000213251.

Analysis of sulfur-related transcription by Roseobacter communities using a taxon-specific functional gene microarray

(Submitter supplied) The fraction of dissolved dimethylsulfoniopropionate (DMSPd) converted by marine bacterioplankton into the climate-active gas dimethylsulfide (DMS) varies widely in the ocean, with the factors that determine this value still largely unknown. One current hypothesis is that the ratio of DMS formation:DMSP demethylation is determined by DMSP availability, with 'availability' in both an absolute sense (i.e., concentration in seawater) and in a relative sense (i.e., proportionally to other labile organic S compounds) being proposed as the critical factor. more...

Organism:: Yoonia vestfoldensis SKA53; Roseobacter sp. MED193; Roseovarius sp. 217; Sulfitobacter sp. EE-36; Roseovarius nubinhibens ISM; Pseudooceanicola batsensis HTCC2597; Sagittula stellata E-37; Ruegeria pomeroyi DSS-3; Jannaschia sp. CCS1; Ruegeria sp. TM1040; Oceanicola granulosus HTCC2516; Sulfitobacter sp. NAS-14.1; Maritimibacter alkaliphilus; marine metagenome

Type:: Expression profiling by array

Platform:: GPL10323
20 Samples

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Series

Accession:: GSE21325

ID:: 200021325

Select item 1000103232.

UGAmamlab_Roseoarray_12k_v2

(Submitter supplied) The microarray was designed based on selected Ruegeria pomeroyi DSS-3 genes and their orthologs in 12 other sequenced Roseobacter genomes. Probes were designed based on the DNA sequences of the orthologs using the Hierarchical Probe Design (HPD) algorithm. The array consists of 1,578 probes to 431 genes. Protocol: See manufacturer website.

Organism:: Sulfitobacter sp. EE-36; Roseovarius nubinhibens ISM; Ruegeria pomeroyi DSS-3; Pseudooceanicola batsensis HTCC2597; Jannaschia sp. CCS1; Ruegeria sp. TM1040; Yoonia vestfoldensis SKA53; Oceanicola granulosus HTCC2516; Roseobacter sp. MED193; Roseovarius sp. 217; Sulfitobacter sp. NAS-14.1; Sagittula stellata E-37; Maritimibacter alkaliphilus