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Items: 10

1.

Conservation and divergence of small RNA pathways in vascular plants revealed by small RNA analyses in lycophytes and ferns

(Submitter supplied) Pathways underlying miRNA biogenesis, degradation, and activity were established early in land plant evolution, but the 24-nt siRNA pathway that guides DNA methylation was incomplete in early land plants, especially lycophytes. We show that the functional diversification of key gene families such as DICER-LIKE and ARGONAUTE (AGO) as observed in angiosperms occurred early in land plants followed by parallel expansion of the AGO family in ferns and angiosperms. more...
Organism:
Diplazium esculentum; Ophioglossum vulgatum; Isoetes sinensis; Dicranopteris pedata; Microlepia platyphylla; Salvinia molesta; Selaginella uncinata; Pteris vittata; Lygodium japonicum; Odontosoria chinensis; Alsophila spinulosa; Psilotum nudum; Cibotium barometz; Vandenboschia striata; Asplenium nidus; Salvinia cucullata; Azolla caroliniana; Palhinhaea cernua; Selaginella moellendorffii; Plenasium vachellii; Microsorum cuspidatum; Equisetum ramosissimum; Cyrtomium fortunei; Angiopteris fokiensis; Diplopterygium chinense
Type:
Non-coding RNA profiling by high throughput sequencing
25 related Platforms
26 Samples
Download data: FASTA
Series
Accession:
GSE98408
ID:
200098408

PubMed Full text in PMC Similar studies SRA Run Selector

2.

The evolution of CHROMOMETHYLTRANSFERASES and gene body DNA methylation in plants

(Submitter supplied) The evolution of gene body methylation (gbM) and the underlying mechanism is poorly understood. By pairing the largest collection of CHROMOMETHYLTRANSFERASE (CMT) sequences (773) and methylomes (72) across land plants and green algae we provide novel insights into the evolution of gbM and its underlying mechanism. The angiosperm- and eudicot-specific whole genome duplication events gave rise to what are now referred to as CMT1, 2 and 3 lineages. more...
Organism:
Psilotum; Equisetum; Synsepalum dulcificum; Araucaria; Juniperus virginiana; Pereskia grandiflora; Kalanchoe tomentosa; Aristolochia grandiflora; Amentotaxus argotaenia; Hypericum perforatum; Chamaecyparis hodginsii; Dacrydium balansae; Manoao colensoi; Cissus quadrangularis; Impatiens niamniamensis; Gnetum gnemon; Urtica dioica; Cyathea; Aloe vera; Amentotaxus formosana; Cephalotaxus harringtonia; Selaginella kraussiana; Yucca brevifolia; Torreya taxifolia; Microsorum punctatum; Dacrycarpus compactus; Celtis occidentalis; Nepenthes bicalcarata; Lupinus angustifolius; Cyperus papyrus; Diplazium proliferum; Papuacedrus papuana; Encephalartos horridus; Thuja sutchuenensis
Type:
Methylation profiling by high throughput sequencing
34 related Platforms
150 Samples
Download data: TXT
Series
Accession:
GSE81702
ID:
200081702

PubMed Full text in PMC Similar studies SRA Run Selector

3.

Illumina NovaSeq X (Equisetum hyemale)

Organism:
Equisetum hyemale
Download data
Platform
Accession:
GPL34648
ID:
100034648

4.

Illumina HiSeq 2500 (Equisetum ramosissimum)

Organism:
Equisetum ramosissimum
1 Series
1 Sample
Download data
Platform
Accession:
GPL23402
ID:
100023402

5.

Illumina NextSeq 500 (Equisetum)

Organism:
Equisetum
1 Series
4 Samples
Download data
Platform
Accession:
GPL21929
ID:
100021929

6.

Era_sRNA

Organism:
Equisetum ramosissimum
Source name:
leaves
Platform:
GPL23402
Series:
GSE98408
Download data: FASTA
Sample
Accession:
GSM2594396
ID:
302594396

SRA Run Selector

7.

Equisetum sp. replicate 4

Organism:
Equisetum
Source name:
genomic DNA
Platform:
GPL21929
Series:
GSE81702
Download data
Sample
Accession:
GSM2171555
ID:
302171555

SRA Run Selector

8.

Equisetum sp. replicate 3

Organism:
Equisetum
Source name:
genomic DNA
Platform:
GPL21929
Series:
GSE81702
Download data
Sample
Accession:
GSM2171554
ID:
302171554

SRA Run Selector

9.

Equisetum sp. replicate 2

Organism:
Equisetum
Source name:
genomic DNA
Platform:
GPL21929
Series:
GSE81702
Download data
Sample
Accession:
GSM2171553
ID:
302171553

SRA Run Selector

10.

Equisetum sp. replicate 1

Organism:
Equisetum
Source name:
genomic DNA
Platform:
GPL21929
Series:
GSE81702
Download data
Sample
Accession:
GSM2171552
ID:
302171552

SRA Run Selector

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db=gds|term=txid3257[Organism:exp]|query=23|qty=61|blobid=MCID_67384465f42521130b3e19e0|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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