txid3864[Organism:noexp] - GEO DataSets

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Select item 2002559511.

Applying a non-GMO breeding approach with an identified natural variation to reduce food allergen Len c3 in Lens culinaris seeds

(Submitter supplied) Lentils (Lens culinaris) are produced in diverse agroecological regions and are consumed as one of the most important food legumes at world-wide. Lentils possess a nutritional profile from a human health perspective that is not only nutrient-dense but also offers a better balance between protein and carbohydrates. However, lentil causes food allergy which has been a significant concern due to increased consumption in parts of the world. more...

Organism:: Lens culinaris

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34200
18 Samples

Download data: CSV

Series

Accession:: GSE255951

ID:: 200255951

Select item 2002162202.

Global gene profilings in embryo and seed coat of lentil during embryogenesis

(Submitter supplied) We present an atlas of global gene expression covering embryo and seed coat development in lentil, providing insights into the evolution of gene expression in embryogenesis of lentil species.

Organism:: Lens culinaris

Type:: Expression profiling by high throughput sequencing

Platform:: GPL32765
50 Samples

Download data: XLSX

Series

Accession:: GSE216220

ID:: 200216220

PubMed Similar studies

Select item 2001848193.

Advances in lentil production through heterosis: evaluating generations and breeding systems

(Submitter supplied) Purpose: calculate genetic diversity in lentil

Organism:: Lens culinaris

Type:: Expression profiling by high throughput sequencing

Platform:: GPL30251
47 Samples

Download data: VCF

Series

Accession:: GSE184819

ID:: 200184819

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001764124.

Lens orientalis contributes quantitative trait loci and candidate genes associated with Ascochyta blight resistance in lentil

(Submitter supplied) Purpose: The goal of this study is to construct an interspecific genetic linkage map using SNP markers generated using a genotyping by sequencing transcript approach. Methods: mRNA profiles of 14-day-old parents and 140 recombinant inbred lines were generated by high-throughput sequencing using Illumina HiSeq 3000 system. The sequence reads that passed filtering were mapped to lentil cultivar Cassab reference transcriptome using Burrows Wheeler Aligner and the SNPs generated were then clustered to linkage groups (LG) to construct a high-density linkage map using the ‘mstmap’ function from within the ASMap R package (v1.0-4) (Taylor and Butler, 2017). more...

Organism:: Lens culinaris x Lens orientalis; Lens culinaris; Lens orientalis

Type:: Expression profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing; Other

Platforms:: GPL30251 GPL30252 GPL30250
142 Samples

Download data: VCF

Series

Accession:: GSE176412

ID:: 200176412

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001151995.

Comparative RNA-seq analysis of the drought-sensitive lentil (Lens culinaris) root and leaf under short- and long-term water deficits

(Submitter supplied) Drought stress is one of the main environmental factors that affects growth and productivity of crop plants, including lentil. To gain insights into the genome-wide transcriptional regulation in lentil root and leaf under short- and long-term drought conditions, we performed RNA-seq on a drought-sensitive lentil cultivar (Lens culinaris Medik. cv. Sultan). After establishing drought conditions, lentil samples were subjected to de novo RNA-seq-based transcriptome analysis. more...

Organism:: Lens culinaris

Type:: Expression profiling by high throughput sequencing

Platform:: GPL25135
18 Samples

Download data: FASTA, TXT

Series

Accession:: GSE115199

ID:: 200115199

PubMed Similar studies SRA Run Selector

Select item 2000113746.

Transcriptional profiling of Ascochyta blight resistance in Lentil

(Submitter supplied) Using a cDNA microarray themed on Ascochyta-Pulse interaction resistance response was studied in two lentil varieties, specifically in response to A. lentis inoculation in a highly resistant (ILL7537) and highly susceptible (ILL6002) lentil variety. The experiments were conducted in reference design, where samples from mock-inoculated controls acted as references against post-inoculation samples and the plants were grown using a uniform and standardized experimental system that minimized environmental effects. more...

Organism:: Lathyrus sativus; Cicer arietinum; Lens culinaris; Lens culinaris subsp. culinaris

Type:: Expression profiling by array

Platform:: GPL3649
10 Samples

Download data: TXT

Series

Accession:: GSE11374

ID:: 200011374

Analyze with GEO2R

Select item 2000085547.

Expression profiling of chickpea responses to drought, cold and high-salinity stresses

(Submitter supplied) ‘Pulsechip’, a boutique cDNA microarray, generated from a set of chickpea (Cicer arietinum L.) unigenes, grasspea (Lathyrus sativus L.) ESTs and lentil (Lens culinaris Med.) resistance gene analogs, was employed to generate an expression profile of chickpea genotype ICC 3996 to drought, cold and high-salinity stresses. The experiments were performed in three biological replications. The experiments were conducted in reference design where respective tissues from unstressed plants served as control. more...

Organism:: Cicer arietinum; Lens culinaris; Lathyrus sativus

Type:: Expression profiling by array

Platform:: GPL5631
8 Samples

Download data: TXT

Series

Accession:: GSE8554

ID:: 200008554

Analyze with GEO2R

Select item 2000075048.

Gene expression profiling of chickpea responses

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Cicer arietinum; Lens culinaris; Lathyrus sativus

Type:: Expression profiling by array

Platform:: GPL3649
32 Samples

Download data: TXT

Series

Accession:: GSE7504

ID:: 200007504

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000074189.

Gene expression profiling of chickpea responses to high-salinity stress

(Submitter supplied) ‘Pulsechip’, a boutique cDNA microarray, generated from a set of chickpea (Cicer arietinum L.) unigenes, grasspea (Lathyrus sativus L.) ESTs and lentil (Lens culinaris Med.) resistance gene analogs, was employed to generate an expression profile of chickpea accessions tolerant and susceptible to high-salinity stress. Two groups of a tolerant and susceptible accession were challenged with high-salinity stress. more...

Organism:: Cicer arietinum; Lens culinaris; Lathyrus sativus

Type:: Expression profiling by array

Platform:: GPL3649
16 Samples

Download data: TXT

Series

Accession:: GSE7418

ID:: 200007418

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000741710.

Gene expression profiling of chickpea responses to cold stress

(Submitter supplied) ‘Pulsechip’, a boutique cDNA microarray, generated from a set of chickpea (Cicer arietinum L.) unigenes, grasspea (Lathyrus sativus L.) ESTs and lentil (Lens culinaris Med.) resistance gene analogs, was employed to generate an expression profile of chickpea accessions tolerant and susceptible to cold stress. Two groups of a tolerant and susceptible accession were challenged with cold stress. The experiments were performed in three biological replications. more...

Organism:: Lathyrus sativus; Cicer arietinum; Lens culinaris

Type:: Expression profiling by array

Platform:: GPL3649
8 Samples

Download data: TXT

Series

Accession:: GSE7417

ID:: 200007417

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000741611.

Gene expression profiling of chickpea responses to drought stress

(Submitter supplied) ‘Pulsechip’, a boutique cDNA microarray, generated from a set of chickpea (Cicer arietinum L.) unigenes, grasspea (Lathyrus sativus L.) ESTs and lentil (Lens culinaris Med.) resistance gene analogs, was employed to generate an expression profile of chickpea accessions tolerant and susceptible to drought stress. Two groups of a tolerant and susceptible accession were challenged with drought stress. The experiments were performed in three biological replications. more...

Organism:: Cicer arietinum; Lens culinaris; Lathyrus sativus

Type:: Expression profiling by array

Platform:: GPL3649
8 Samples

Download data: TXT

Series

Accession:: GSE7416

ID:: 200007416

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000466012.

Expression profiling of Chickpea genes differentially regulated during a resistance response to Ascochyta rabiei

(Submitter supplied) Using microarray technology and a set of chickpea (Cicer arietinum L.) unigenes, grasspea (Lathyrus sativus L.) ESTs and lentil (Lens culinaris Med.) resistance gene analogs, the ascochyta blight (Ascochyta rabiei (Pass.) L.) resistance response was studied in four chickpea genotypes, including resistant, moderately resistant, susceptible and wild relative (Cicer echinospermum L.) genotypes. The experimental system minimized environmental effects and was conducted in reference design, where samples from mock-inoculated controls acted as references against post-inoculation samples. more...

Organism:: Cicer arietinum; Lens culinaris; Lathyrus sativus

Type:: Expression profiling by array

Platform:: GPL3649
20 Samples

Download data: TXT

Series

Accession:: GSE4660

ID:: 200004660

Select item 10003420013.

Illumina NovaSeq 6000 (Lens culinaris)

Organism:: Lens culinaris

1 Series
18 Samples

Download data

Platform

Accession:: GPL34200

ID:: 100034200

Select item 10003382414.

Illumina NextSeq 500 (Lens culinaris)

Organism:: Lens culinaris

Download data

Platform

Accession:: GPL33824

ID:: 100033824

Select item 10003276515.

Illumina HiSeq 2000 (Lens culinaris)

Organism:: Lens culinaris

1 Series
50 Samples

Download data

Platform

Accession:: GPL32765

ID:: 100032765

Select item 10003025116.

Illumina HiSeq 3000 (Lens culinaris)

Organism:: Lens culinaris

2 Series
48 Samples

Download data

Platform

Accession:: GPL30251

ID:: 100030251

Select item 10002513517.

Illumina HiSeq 4000 (Lens culinaris)

Organism:: Lens culinaris

1 Series
18 Samples

Download data

Platform

Accession:: GPL25135

ID:: 100025135

Select item 10000563118.

PulseChip

(Submitter supplied) Coram TE and Pang ECK. 2006. Expression profiling of chickpea genes differentially regulated during a resistance response to Ascochyta rabiei. Published in Plant Biotechnology Journal. A total of 715 ESTs, 41 RGA DNA sequences, and 12 controls were used in the construction of 768-feature microarrays according to minimum information about a microarray experiment guidelines (MIAME). Of the 715 ESTs, 516 were obtained from a previously synthesized and characterized EST collection constructed from cDNA of the ascochyta blight resistant ICC3996 chickpea genotype. more...