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Items: 12

1.

RNA-seq of human gut bacterial isolates grown on seaweed polysaccharides

(Submitter supplied) Purpose: Examining the transcriptome of human gut bacteria that grow on seaweed polysaccharides as a sole carbon source Methods: Strains were grown on 5 mg/ml seaweed polysaccharides (carrageenan, agarose and/or poprhyran respective to strain) or galactose as a sole carbon source in vitro. Fold change was calculated as seaweed polysaccharide over galactose with n=2 biological replicates. Once cells reached an optical density corresponding to mid-log phase growth, RNA was isolated and rRNA depleted. more...
Organism:
Bacteroides thetaiotaomicron; Faecalicatena contorta; Faecalicatena fissicatena; Bacteroides xylanisolvens
Type:
Expression profiling by high throughput sequencing
4 related Platforms
24 Samples
Download data: XLSX
Series
Accession:
GSE149357
ID:
200149357

SRA Run Selector

2.

Illumina NextSeq 500 (Faecalicatena contorta)

Organism:
Faecalicatena contorta
1 Series
10 Samples
Download data
Platform
Accession:
GPL28454
ID:
100028454

3.

Faecalicatena contorta 588 Porphyran 2

Organism:
Faecalicatena contorta
Source name:
Bacterial Total RNA
Platform:
GPL28454
Series:
GSE149357
Download data
Sample
Accession:
GSM4498576
ID:
304498576

SRA Run Selector

4.

Faecalicatena contorta 588 Porphyran 1

Organism:
Faecalicatena contorta
Source name:
Bacterial Total RNA
Platform:
GPL28454
Series:
GSE149357
Download data
Sample
Accession:
GSM4498575
ID:
304498575

SRA Run Selector

5.

Faecalicatena contorta 588 Galactose 2

Organism:
Faecalicatena contorta
Source name:
Bacterial Total RNA
Platform:
GPL28454
Series:
GSE149357
Download data
Sample
Accession:
GSM4498574
ID:
304498574

SRA Run Selector

6.

Faecalicatena contorta 588 Galactose 1

Organism:
Faecalicatena contorta
Source name:
Bacterial Total RNA
Platform:
GPL28454
Series:
GSE149357
Download data
Sample
Accession:
GSM4498573
ID:
304498573

SRA Run Selector

7.

Faecalicatena contorta 548 Porphyran 2

Organism:
Faecalicatena contorta
Source name:
Bacterial Total RNA
Platform:
GPL28454
Series:
GSE149357
Download data
Sample
Accession:
GSM4498572
ID:
304498572

SRA Run Selector

8.

Faecalicatena contorta 548 Porphyran 1

Organism:
Faecalicatena contorta
Source name:
Bacterial Total RNA
Platform:
GPL28454
Series:
GSE149357
Download data
Sample
Accession:
GSM4498571
ID:
304498571

SRA Run Selector

9.

Faecalicatena contorta 548 Agarose 2

Organism:
Faecalicatena contorta
Source name:
Bacterial Total RNA
Platform:
GPL28454
Series:
GSE149357
Download data
Sample
Accession:
GSM4498570
ID:
304498570

SRA Run Selector

10.

Faecalicatena contorta 548 Agarose 1

Organism:
Faecalicatena contorta
Source name:
Bacterial Total RNA
Platform:
GPL28454
Series:
GSE149357
Download data
Sample
Accession:
GSM4498569
ID:
304498569

SRA Run Selector

11.

Faecalicatena contorta 548 Galactose 2

Organism:
Faecalicatena contorta
Source name:
Bacterial Total RNA
Platform:
GPL28454
Series:
GSE149357
Download data
Sample
Accession:
GSM4498568
ID:
304498568

SRA Run Selector

12.

Faecalicatena contorta 548 Galactose 1

Organism:
Faecalicatena contorta
Source name:
Bacterial Total RNA
Platform:
GPL28454
Series:
GSE149357
Download data
Sample
Accession:
GSM4498567
ID:
304498567

SRA Run Selector

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db=gds|term=txid39482[Organism:noexp]|query=3|qty=5|blobid=MCID_673701032874ea24c426a517|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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