txid551287[Organism:exp] - GEO DataSets

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Select item 2002475591.

Impact of modeled microgravity stress on innate immunity in a beneficial animal-microbe symbiosis

(Submitter supplied) The innate immune response is the first line of defense for all animals to not only detect invading microbes and toxins but also sense and interface with the environment. One such environment that can significantly affect innate immunity is spaceflight. In this study, we explored the impact of microgravity stress on key elements of the NFκB innate immune pathway. The symbiosis between the bobtail squid Euprymna scolopes and its beneficial symbiont Vibrio fischeri was used as a model system under a simulated microgravity environment. more...

Organism:: Euprymna scolopes

Type:: Expression profiling by array

Platform:: GPL33929
96 Samples

Download data: RCC

Series

Accession:: GSE247559

ID:: 200247559

PubMed Full text in PMC Similar studies

Select item 2001575492.

Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization

(Submitter supplied) Coleoid cephalopods (squids, cuttlefish, octopus) have the largest nervous system among invertebrates that together with many lineage-specific morphological traits enables complex behaviors. The genomic basis underlying these innovations remains unknown. Using comparative and functional genomics in the model squid Euprymna scolopes, we reveal the unique genomic, topological, and regulatory organization of cephalopod genomes. more...

Organism:: Euprymna scolopes

Type:: Genome binding/occupancy profiling by high throughput sequencing; Other

Platform:: GPL29112
7 Samples

Download data: TXT

Series

Accession:: GSE157549

ID:: 200157549

SRA Run Selector

Select item 2000135333.

Colonization, luminescence, and autoinducer effects on host transcription during development of squid-vibrio association

(Submitter supplied) The light-organ symbiosis between the squid Euprymna scolopes and the luminous bacterium Vibrio fischeri offers the opportunity to decipher the hour-by-hour events that occur during the natural colonization of an animal's epithelial surface by its microbial partners. To determine the genetic basis of these events, a glass-slide microarray was used to characterize the light-organ transcriptome of juvenile squid in response to the initiation of symbiosis. more...

Organism:: Euprymna scolopes

Type:: Expression profiling by array

Platform:: GPL3825
45 Samples

Download data: GPR

Series

Accession:: GSE13533

ID:: 200013533

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000339294.

NanoString nCounter squid NFκB innate immunity

(Submitter supplied) NanoString Technologies

Organism:: Euprymna scolopes

1 Series
96 Samples

Download data: XLSX

Platform

Accession:: GPL33929

ID:: 100033929

Select item 1000340275.

Illumina NovaSeq 6000 (Sepia officinalis)

Organism:: Sepia officinalis

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Platform

Accession:: GPL34027

ID:: 100034027

Select item 1000322816.

PacBio RS II (Euprymna berryi)

Organism:: Euprymna berryi

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Platform

Accession:: GPL32281

ID:: 100032281

Select item 1000322807.

Illumina MiSeq (Euprymna berryi)

Organism:: Euprymna berryi

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Platform

Accession:: GPL32280

ID:: 100032280

Select item 1000322798.

Illumina NovaSeq 6000 (Euprymna berryi)

Organism:: Euprymna berryi

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Platform

Accession:: GPL32279

ID:: 100032279

Select item 1000322789.

Illumina HiSeq 4000 (Euprymna berryi)

Organism:: Euprymna berryi

Download data

Platform

Accession:: GPL32278

ID:: 100032278

Select item 10002911210.

Illumina HiSeq 2500 (Euprymna scolopes)

Organism:: Euprymna scolopes

1 Series
7 Samples

Download data

Platform

Accession:: GPL29112

ID:: 100029112

Select item 10000382511.

UI Squid EST 30K cDNA array

(Submitter supplied) Glass slide with 30,005 spots (13,978 unique cDNA clone inserts) in 48 blocks consisting of 25 columns and 25 rows. Blocks are arranged in 12 rows and 4 columns. The set of 13,978 cDNA clone inserts was identified form the University of Iowa EST collection. The clone inserts were amplified with T7 and T3 primers and printed with 50% DMSO on UltraGaps slides (Corning) using a ProSys 5510 Microarray Printer. more...