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Functional Genomics Studies

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Select item 2001932241.

A giant virus genome is densely packaged by stable nucleosomes

(Submitter supplied) The doublet histones of Marseillevirus are distantly related to the four eukaryotic core histones and wrap DNA to form remarkably similar nucleosomes. By releasing Marseillevirus chromatin from virions into solution and performing genome-wide nuclease digestion and chemical cleavage assays, we find that the higher-order organization of Marseillevirus chromatin differs greatly from that of eukaryotes. more...

Organism:: Drosophila melanogaster; synthetic construct; Marseillevirus marseillevirus

Type:: Genome binding/occupancy profiling by high throughput sequencing

7 related Platforms
117 Samples

Download data: BED, BEDGRAPH, BIGWIG, FASTA, PDF

Series

Accession:: GSE193224

ID:: 200193224

PubMed Similar studies

Select item 1000326292.

NextSeq 2000 (Marseillevirus marseillevirus)

Organism:: Marseillevirus marseillevirus

1 Series
8 Samples

Platform

Accession:: GPL32629

ID:: 100032629

Select item 1000321083.

Illumina NextSeq 500 (Marseillevirus marseillevirus)

Organism:: Marseillevirus marseillevirus

1 Series
2 Samples

Platform

Accession:: GPL32108

ID:: 100032108

Select item 1000311874.

Illumina HiSeq 2500 (Marseillevirus marseillevirus)

Organism:: Marseillevirus marseillevirus

1 Series
57 Samples

Platform

Accession:: GPL31187

ID:: 100031187

Select item 3057770135.

T19_no-MNase_(20210610_TB_Mv_20210526_0x)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 no MNase

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777013

ID:: 305777013

SRA Run Selector

Select item 3057770126.

T19_MPE_(20210810_TB_MV_T19_MPE_210730)

Organism:: Marseillevirus marseillevirus

Source name:: MPE-seq of T19

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777012

ID:: 305777012

SRA Run Selector

Select item 3057770117.

T19_8th_MNase_(20210610_TB_Mv_20210526_1_8x)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 1/32nd MNase

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777011

ID:: 305777011

SRA Run Selector

Select item 3057770108.

T19_64th_MNase_(20210610_TB_Mv_20210526_1_64x)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 1/256th MNase

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777010

ID:: 305777010

SRA Run Selector

Select item 3057770099.

T19_5min_MNase_(20210506_TB_Mv_5min_0430)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 5 min MNase

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777009

ID:: 305777009

SRA Run Selector

Select item 30577700810.

T19_4x_NP40_(20210920_TB_Mv_T19_0_4xMnase_TM2_NP40)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 NP40

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777008

ID:: 305777008

SRA Run Selector

Select item 30577700711.

T19_4x_MNase_2_(20210810_TB_MV_T19_4x_Mnase_210730)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777007

ID:: 305777007

SRA Run Selector

Select item 30577700612.

T19_4x_MNase_1_(20210610_TB_Mv_20210526_4x)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 1x MNase

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777006

ID:: 305777006

SRA Run Selector

Select item 30577700513.

T19_4x_day4_NP40_(20210920_TB_Mv_T19_0_4xMnase_TM2_NP40_day4)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 day 4 NP40

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777005

ID:: 305777005

SRA Run Selector

Select item 30577700414.

T19_4x_day1_NP40_(20210920_TB_Mv_T19_0_4xMnase_TM2_NP40_day1)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 day 1 NP40

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777004

ID:: 305777004

SRA Run Selector

Select item 30577700315.

T19_4x_7m_NP40_(20211006_TB_Mv_T19_7mNP40_Mnase_20210914)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 7 min NP40

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777003

ID:: 305777003

SRA Run Selector

Select item 30577700216.

T19_4x_7h_NP40_(20211006_TB_Mv_T19_7hNP40_Mnase_20210914)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 7 hr NP40

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777002

ID:: 305777002

SRA Run Selector

Select item 30577700117.

T19_4x_55m_NP40_(20211006_TB_Mv_T19_55mNP40_Mnase_20210914)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 55 min NP40

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777001

ID:: 305777001

SRA Run Selector

Select item 30577700018.

T19_4x_3m_NP40_(20211006_TB_Mv_T19_3mNP40_Mnase_20210914)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 3 min NP40

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5777000

ID:: 305777000

SRA Run Selector

Select item 30577699919.

T19_4x_3h_NP40_(20211006_TB_Mv_T19_3hNP40_Mnase_20210914)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 3 hr NP40

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5776999

ID:: 305776999

SRA Run Selector

Select item 30577699820.

T19_4x_2m_NP40_(20210920_TB_Mv_T19_2_4xMnase_TM2_NP40)

Organism:: Marseillevirus marseillevirus

Source name:: MNase-seq of T19 2 NP40

Platform:: GPL31187
Series:: GSE193224

Download data: BED, BEDGRAPH

Sample

Accession:: GSM5776998

ID:: 305776998

SRA Run Selector

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txid694581[Organism:noexp] (71)
GEO DataSets
txid694581[Subtree] (2)
Taxonomy
creatine kinase B-type isoform 2 [Homo sapiens]
creatine kinase B-type isoform 2 [Homo sapiens]
gi|1379048550|ref|NP_001349460.1|

Protein
MAG: Thermococcus sp. 40_45, whole genome shotgun sequencing project
MAG: Thermococcus sp. 40_45, whole genome shotgun sequencing project
gi|973056248|gb|LGFJ00000000.1|LGFJ 000

Nucleotide
MAG: Actinobacteria bacterium 66_15, whole genome shotgun sequencing project
MAG: Actinobacteria bacterium 66_15, whole genome shotgun sequencing project
gi|973089144|gb|LGFV00000000.1|LGFV 000

Nucleotide

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