txid79329[Organism:exp] - GEO DataSets - NCBI

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Items: 20

Select item 2002681491.

Transcriptomic analyses of bacterial growth on fungal necromass reveals different microbial community niches during degradation

(Submitter supplied) Bacteria are major drivers of organic matter decomposition and play crucial roles in global nutrient cycling. Although the degradation of dead fungal biomass (necromass) is increasingly recognized as an important contributor to soil carbon (C) and nitrogen (N) cycling, the genes and metabolic pathways involved in necromass degradation are under characterized. In particular, how bacteria degrade necromass containing different quantities of melanin, which largely control rates of necromass decomposition in situ, is largely unknown. more...

Organism:: Chitinophaga pinensis; Serratia marcescens; Cellvibrio japonicus

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL34518 GPL34520 GPL34519
48 Samples

Download data: CSV, XLSX

Series

Accession:: GSE268149

ID:: 200268149

Select item 1000345192.

Illumina HiSeq 1000 (Chitinophaga pinensis)

Organism:: Chitinophaga pinensis

1 Series
18 Samples

Platform

Accession:: GPL34519

ID:: 100034519

Select item 3082864283.

Cp_NecLo_Sta_Rep3

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286428

ID:: 308286428

SRA Run Selector

Select item 3082864274.

Cp_NecLo_Sta_Rep2

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286427

ID:: 308286427

SRA Run Selector

Select item 3082864265.

Cp_NecLo_Sta_Rep1

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286426

ID:: 308286426

SRA Run Selector

Select item 3082864256.

Cp_NecLo_Log_Rep3

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286425

ID:: 308286425

SRA Run Selector

Select item 3082864247.

Cp_NecLo_Log_Rep2

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286424

ID:: 308286424

SRA Run Selector

Select item 3082864238.

Cp_NecLo_Log_Rep1

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286423

ID:: 308286423

SRA Run Selector

Select item 3082864229.

Cp_NecHi_Sta_Rep3

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286422

ID:: 308286422

SRA Run Selector

Select item 30828642110.

Cp_NecHi_Sta_Rep2

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286421

ID:: 308286421

SRA Run Selector

Select item 30828642011.

Cp_NecHi_Sta_Rep1

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286420

ID:: 308286420

SRA Run Selector

Select item 30828641912.

Cp_NecHi_Log_Rep3

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286419

ID:: 308286419

SRA Run Selector

Select item 30828641813.

Cp_NecHi_Log_Rep2

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286418

ID:: 308286418

SRA Run Selector

Select item 30828641714.

Cp_NecHi_Log_Rep1

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286417

ID:: 308286417

SRA Run Selector

Select item 30828641615.

Cp_Glc_Sta_Rep3

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286416

ID:: 308286416

SRA Run Selector

Select item 30828641516.

Cp_Glc_Sta_Rep2

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286415

ID:: 308286415

SRA Run Selector

Select item 30828641417.

Cp_Glc_Sta_Rep1

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286414

ID:: 308286414

SRA Run Selector

Select item 30828641318.

Cp_Glc_Log_Rep3

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286413

ID:: 308286413

SRA Run Selector

Select item 30828641219.

Cp_Glc_Log_Rep2

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286412

ID:: 308286412

SRA Run Selector

Select item 30828641120.

Cp_Glc_Log_Rep1

Organism:: Chitinophaga pinensis

Source name:: Bacterial cell

Platform:: GPL34519
Series:: GSE268149

Sample

Accession:: GSM8286411

ID:: 308286411

SRA Run Selector

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