GEO DataSets

(Submitter supplied) E.coli K-12 W3110 was grown in LB medium and harvested at each time point. And time series microarray experiments were performed based on reference desgin. In reference design, the control sample is collected at one representative time point. Combining with data from sequential design, more acculate and reliable expression series could be collected. Keywords: Reference design

Organism:

Escherichia coli

Type:

Expression profiling by array

Platform:

GPL4374

22 Samples

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(Submitter supplied) Cellular metabolism controls gene expression through allosteric interactions between metabolites and transcription factors. Methods to detect these regulatory interactions are mostly based on in vitro binding assays, but there are no methods to identify them at a genome-scale in vivo. Here we show that dynamic transcriptome and metabolome data identify metabolites that are potential effectors of transcription factors in E. more...

Organism:

Escherichia coli

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26155

56 Samples

Download data: CSV

(Submitter supplied) Environmental fluctuations lead to a rapid adjustment of the physiology of Escherichia coli, necessitating changes on every level of the underlying cellular and molecular network. Thus far, the vast majority of global analyses of E. coli stress responses have been limited to just one level, gene expression. Here we incorporate the metabolite composition together with gene expression data in order to provide a more comprehensive insight on system level stress adjustments by describing detailed time-resolved E. more...

Organism:

Escherichia coli str. K-12 substr. MG1655

Type:

Expression profiling by array

Platform:

GPL10041

122 Samples

Download data: TXT

(Submitter supplied) In-depth analysis of the usefulness of single-sample metabolite/RNA extraction for multi-‘omics readout.

Organism:

Mus musculus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24247

40 Samples

Download data: TXT