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Links from GEO DataSets

Items: 5

1.

Aorta profiling HMDP

(Submitter supplied) Identify genes in the aorta whose expressions under genetic regulation in the Hybrid Mouse Diversity Panel (HMDP). The HDMP is comprised of classical inbred and recombinant inbred wild-type mice. The RMA values of genes were used for genome-wide association as described in Bennett et al. Genome Research 2010 (PMID 20054062). These data were used to identify candidate genes at loci associated with atherosclerosis.
Organism:
Mus musculus
Type:
Expression profiling by array
Platform:
GPL8759
188 Samples
Download data: CEL
Series
Accession:
GSE38120
ID:
200038120
2.

Hybrid Mouse diversity Panel Liver Expression Profile

(Submitter supplied) Novel, systems-based approach to mouse genetics.
Organism:
Mus musculus
Type:
Expression profiling by array
Platform:
GPL8759
288 Samples
Download data: CEL
Series
Accession:
GSE16780
ID:
200016780
3.

MF1 outbred stock liver gene expression data

(Submitter supplied) Linkage analysis of complex traits in mice is a powerful tool to find loci affecting the phenotype but it has a poor resolution making it difficult to identify the underlying genes. We show here, using whole genome association analysis of gene expression traits in an outbred mouse population, the MF1 stock, that mapping resolution is greatly increased as compared to linkage. The fact that eQTLs discovered in other crosses were replicated and successfully mapped with high resolution in this population provides a strong proof of concept. more...
Organism:
Mus musculus
Type:
Expression profiling by array
Platform:
GPL6422
110 Samples
Download data: TXT
Series
Accession:
GSE10280
ID:
200010280
4.

Age-related retinal degeneration study in mice

(Submitter supplied) The first goal of the study was to find the genes that explain the difference in progression of age-related retinal degeneration (ageRD) between the inbred strains C57BL/6J-c2J (B6a) and BALB/cByJ (C). The specific goal was to find the candidate genes that explain the chromosome 6 and chromosome 10 quantitative trait loci (QTL) found in a previous study. Genes differentially expressed in retina between both strains and that map to the QTL are candidate genes. more...
Organism:
Mus musculus
Type:
Expression profiling by array
Platform:
GPL9214
16 Samples
Download data
Series
Accession:
GSE18151
ID:
200018151
5.

Candidate Gene Identification Through RNA-Seq Analysis of (TRAMP x WSB/EiJ) F2 Primary Tumors

(Submitter supplied) RNA-seq analysis of 115 randomly selected (TRAMP x WSB/EiJ) F2 prostates that had been harvested at experimental termination was performed to identify metastasis associated transcriptomic changes
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL13112
115 Samples
Download data: TXT
Series
Accession:
GSE108131
ID:
200108131
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