GEO DataSets

(Submitter supplied) Ralstonia eutropha H16 is well-known to produce poly(3-hydroxybutyrate) [P(3HB)], a kind of polyhydroxyalkanoates attracted as bio-based biodegradable plastics, efficiently as an energy storage material under unbalanced growth conditions. To obtain further extended knowledge of PHA biosynthesis, this study employed quantitative transcriptome analysis based on deep sequencing of complementary DNA generated from RNA (RNA-seq) for R. more...

Organism:

Cupriavidus necator H16

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17263

3 Samples

Download data: TXT

(Submitter supplied) Whole genome gene expression analysis was examined with Ralstonia eutropha strain H16 cultures grown in PHB production medium (recipe per Peoples and Sinskey, 1989) containing fructose or trioleate as the main carbon source. The goal of this analysis was to determine the identity of the triacylglycerol and fatty acid breakdown genes in R. eutropha strain H16.

Organism:

Cupriavidus necator; Cupriavidus necator H16

Type:

Expression profiling by array

Platform:

GPL10276

15 Samples

Download data: CEL

(Submitter supplied) http://www.affymetrix.com/products_services/arrays/specific/cexpress.affx

Organism:

Cupriavidus necator

1 Series

15 Samples

Download data: CDF, TXT

(Submitter supplied) The Wood-Ljungdahl pathway in acetogens converts C1 compounds, such as CO2 and CO, into acetyl-CoA. Similarly, the glycine synthase pathway assimilates C1 compounds into glycine. Partial glycine synthase genes are widely conserved in the Wood-Ljungdahl pathway gene cluster but functional relationship between the pathways in autotrophic condition remains unknown. To comprehend, we assembled Clostridium drakei genome (5.7-Mbp) with intact glycine synthase pathway and constructed a genome-scale metabolic model, iSL836, predicting increased metabolic flux rates of the Wood-Ljungdahl pathway and the glycine synthase-reductase associated reactions under autotrophic conditions. more...

Organism:

Clostridium drakei

Type:

Expression profiling by high throughput sequencing

Platform:

GPL25449

4 Samples

Download data: TXT

(Submitter supplied) Autotrophic conversion of CO2 to value-added biochemicals has received considerable attention for the sustainable route to replace the fossil fuels. Particularly, anaerobic acetogenic bacteria are naturally capable of reducing CO2 or CO to various metabolites. To fully utilize their biosynthetic potential, systemic understanding of the metabolic network with the transcriptional and translational regulation of the corresponding genes is highly demanded. more...

Organism:

Eubacterium limosum

Type:

Expression profiling by high throughput sequencing; Other

Platforms:

GPL23275 GPL23276

10 Samples

Download data: FA, GFF, TXT