GEO DataSets

(Submitter supplied) Gene expression analysis of the different tissues of one month old seedlings or Pinus pinaster.

Organism:

Pinus pinaster

Type:

Expression profiling by high throughput sequencing

Platform:

GPL21513

14 Samples

Download data: FASTA, TXT

(Submitter supplied) Transcriptional profiling of Pinus pinaster adult needles in a complete year. The needles were isolated by year emergence (whorl) in four groups. 0 (2012), 1 (2011), 2 (2010) and 3 (2009). The samples were harvested at 1245 m of altitude at Los Reales de Sierra Bermeja (Spain) (30S X:303.095 Y:4.039.618) one time per month.

Organism:

Pinus pinaster

Type:

Expression profiling by array

Platform:

GPL18419

66 Samples

Download data: GPR

(Submitter supplied) In the present study, the gene expression changes in four different tissues of root tips from maritime pine were analyzed. The roots were under two nutritional conditions (only watered or fertilised with 3 mM of ammonium) and harvested after 24 hours of the treatment.

Organism:

Pinus pinaster

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30195

24 Samples

Download data: TXT

(Submitter supplied) Coniferous trees use the oleoresin, a mixture of non-volatile non-volatile diterpene acids and a large (20-50%) volatile fraction of mono- and sesquiterpenes, as a defence tool against damaging herbivores and pathogens. Volatilization of monoterpenes increases viscosity of oleoresin and finally leading to polymerization of resin and a formation of protective solid plug. Resin storing conifers form an important source of volatile organic compounds (VOCs) mainly dominated by volatile monoterpenes. more...

Organism:

Pinus sylvestris

Type:

Expression profiling by array

Platform:

GPL19078

6 Samples

Download data: PAIR

(Submitter supplied) The transcriptome of needles from plants propagated by cuttings and cultured in the same conditions at SERIDA’s greenhouse at Villaviciosa (Asturias, Spain) were analyzed. The cuttings are from two different provenances of Pinus pinaster; Leiria (Portugal) and Tamrabta (Morocco). Their transcriptomes were analyzed using high throughput sequencing

Organism:

Pinus pinaster

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19253

4 Samples

Download data: TXT

(Submitter supplied) The transcriptome of needles from plants propagated by cuttings and cultured in the same condictions at SERIDA’s greenhouse at Villaviciosa (Asturias, Spain) were analyzed.

Organism:

Pinus pinaster

Type:

Expression profiling by array

Platform:

GPL19234

8 Samples

Download data: GPR

(Submitter supplied) Tertiary lymphoid organs (TLOs) emerge in response to nonresolving inflammation but their roles in adaptive immunity remain unknown. Here, we explored artery TLOs (ATLOs) to delineate atherosclerosis T cell responses in apoe-/- mice during aging. Though the T cell repertoire showed systemic age-associated contractions in size and modifications in subtype composition and activation, wt and apoe-/- mice were equally affected. more...

Organism:

Mus musculus

Type:

Expression profiling by array

Platforms:

GPL8321 GPL1261

65 Samples

Download data: CEL, EXP

(Submitter supplied) Sirex noctilio F., a Eurasian horntail woodwasp recently introduced into North America, oviposits in pines and other conifers and in the process spreads a phytopathogenic fungus that serves as a food source for its larvae. During oviposition the woodwasp also deposits a mucus produced in its acid (venom) gland that alters pine defense responses and facilitates infection by the fungus. A 26,496-feature loblolly pine cDNA microarray was used to survey gene expression of pine tissue responding to S. more...

Organism:

Pinus taeda

Type:

Expression profiling by array

Platform:

GPL15915

24 Samples

Download data: TXT

(Submitter supplied) Epitranscriptomics modifications constitute a gene expression checkpoint in all living organism including plants. Considering the relevance of nitrogen nutrition and metabolism for the correct plant growth and development, it can be hypothesized that epitranscriptome changes must regulate every biological process in plants including nitrogen nutrition. In the present work, the epritranscriptomics changes in maritime pine roots caused by ammonium nutrition have been monitored through direct RNA sequencing using Oxford Nanopore Technology. more...

Organism:

Pinus pinaster

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30179

6 Samples

Download data: TXT

(Submitter supplied) Comprehensive analysis of molecular pathology requires a collection of reference samples representing normal tissues from healthy donors. There is a shortage now of the gene expression data for human healthy tissues. The available data can either lack biological replicates or represent tissues adjacent to tumors removed during surgery that have signs of pathology and inflammation. For the available limited collections of normal tissues from post mortal donors, there is a problem of data incompatibility, as different datasets were generated using different experimental platforms and cannot be merged in a single panel. more...

Organism:

Homo sapiens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL21290

165 Samples

Download data: TSV

(Submitter supplied) High-throughput gene expression profiling has become an important tool for investigating transcriptional activity in a variety of biological samples. To date, the vast majority of these experiments have focused on specific biological processes and perturbations. Here, we have generated and analyzed gene expression from a set of samples spanning a broad range of biological conditions. Specifically, we profiled gene expression from 91 human and mouse samples across a diverse array of tissues, organs, and cell lines. more...

Organism:

Mus musculus

Type:

Expression profiling by array

Dataset:

GDS182

Platform:

GPL32

90 Samples

Download data: CEL

(Submitter supplied) High-throughput gene expression profiling has become an important tool for investigating transcriptional activity in a variety of biological samples. To date, the vast majority of these experiments have focused on specific biological processes and perturbations. Here, we have generated and analyzed gene expression from a set of samples spanning a broad range of biological conditions. Specifically, we profiled gene expression from 91 human and mouse samples across a diverse array of tissues, organs, and cell lines. more...

Organism:

Homo sapiens

Type:

Expression profiling by array

Dataset:

GDS181

Platforms:

GPL8300 GPL91

85 Samples

Download data: CEL

Gene expression profiles from a diverse array of tissues, organs, and cell lines, from the normal physiological state. Represents a preliminary description of the normal mammalian transcriptome.

Organism:

Mus musculus

Type:

Expression profiling by array, count, 45 tissue sets

Platform:

GPL32

Series:

GSE97

90 Samples

Download data: CEL

Gene expression profiles from a diverse array of tissues, organs, and cell lines, from the normal physiological state. Represents a preliminary description of the normal mammalian transcriptome.

Organism:

Homo sapiens

Type:

Expression profiling by array, count, 39 tissue sets

Platform:

GPL91

Series:

GSE96

84 Samples

Download data: CEL