GEO DataSets

(Submitter supplied) In the present study we applied NAD captureSeq to charecterize the 5'-NAD-RNA profile of E. coli BW25113 wt strain as well as nudC and csdA knockouts. The data obtained showed that both knockouts resulted in an increased number of identified 5’-NAD-RNA species, thus suggesting that CsdA might add a potentially new layer of control on NAD-epitranscriptomic landscape.

Organism:

Escherichia coli

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32081

15 Samples

Download data: TSV

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Escherichia coli

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32081

21 Samples

Download data: TSV

(Submitter supplied) In the present study we performed total RNA sequencing of E. coli BW25113 wt and nudC knockout strains. RNA-seq analysis revealed that the inactivation of nudC gene in bacteria shows alteration of level of sRNA and protein-coding transcripts mainly associated with bacterial chemotaxis and flagellar assembly pathways.

Organism:

Escherichia coli

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32081

6 Samples

Download data: TSV

(Submitter supplied) The cell cycle coordinates with growth to ensure suitable genome inheritance. The CsdA protein is a highly conserved, DEAD-box RNA helicase and assists RNA structural remodeling at low temperature. The absence of CsdA yields a severe growth defect manifested by increased doubling time, more extensive cell size, or slower colony growth at low temperature. Nevertheless, it is unknown how the lack of CsdA at low temperature affects the cell cycle and the causes of the yield of severe growth defect phenotypes. more...

Organism:

Escherichia coli

Type:

Expression profiling by array

Platform:

GPL3154

4 Samples

Download data: CEL