GEO DataSet Links for PMC (Select 3038775) - GEO DataSets

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Items: 4

Select item 2000381131.

Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Arabidopsis thaliana; Arabidopsis lyrata

Type:: Expression profiling by genome tiling array; Expression profiling by high throughput sequencing

Platforms:: GPL11022 GPL10977
7 Samples

Download data: BED, CEL

Series

Accession:: GSE38113

ID:: 200038113

PubMed Full text in PMC Similar studies

Select item 2000381092.

Natural variation in Arabidopsis thaliana transcriptomes

(Submitter supplied) A major effort is underway to study the natural variation within the model plant species, Arabidopsis thaliana. Much of this effort is focused on genome resequencing, however the translation of genotype to phenotype will be largely effected through variations within the transcriptomes at the sequence and expression levels. To examine the cross-talk between natural variation in genomes and transcriptomes, we have examined the transcriptomes of three divergent A. more...

Organism:: Arabidopsis thaliana

Type:: Expression profiling by genome tiling array

Platform:: GPL10977
3 Samples

Download data: CEL, TXT

Series

Accession:: GSE38109

ID:: 200038109

PubMed Full text in PMC Similar studies

Select item 2000245713.

Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata [RNA-Seq]

(Submitter supplied) Transposable elements (TEs) are often the primary determinant of genome size differences among eukaryotes. In plants, the proliferation of TEs is countered through epigenetic silencing mechanisms that prevent transposition. Recent studies using the model plant Arabidopsis thaliana have revealed that methylated TE insertions are often associated with reduced expression of nearby genes, and these insertions may be subject to purifying selection due to their effect on nearby genes. more...

Organism:: Arabidopsis lyrata

Type:: Expression profiling by high throughput sequencing

Platform:: GPL11022
4 Samples

Download data: BED

Series

Accession:: GSE24571

ID:: 200024571

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000245694.

Homology-guided Assembly of the Genomes of the Four Diverse Accessions Ler, C24, Bur-0 and Kro-0

(Submitter supplied) Here we present the first whole-genome assemblies of Arabidopsis thaliana strains since the release of the 125 Mb reference genome sequence a decade ago. We demonstrate their practical relevance in studying the expression differences of polymorphic genes and show how the analysis of sRNA sequencing data can lead to erroneous conclusions if aligned against the reference genome alone.