GEO DataSet Links for SRA (Select 26296730) - GEO DataSets

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Items: 2

Select item 3069472641.

Fs+Cc RNase H Rep3

Organism:: Fibrobacter succinogenes; Caecomyces churrovis

Source name:: strain UWB7, C. churrovis

Platform:: GPL33048
Series:: GSE223404

Download data: TXT

Sample

Accession:: GSM6947264

ID:: 306947264

SRA Run Selector

Select item 2002234042.

Bacterial mRNA sequencing through targeted rRNA depletion for efficient RNA-seq in varied species and co-cultures

(Submitter supplied) mRNA sequencing in bacteria is challenging due to the abundance of ribosomal rRNA that cannot be easily removed prior to sequencing. While commercially available kits target specific rRNA sequences found in defined lists of common bacterial species, they are frequently inefficient when applied to other divergent species, including those from environmental isolates. Similar to the commercial kits, other common techniques for rRNA depletion typically employ large probe sets that tile full-length rRNA sequences; however, such approaches are both time consuming and expensive when applied to multiple species or complex consortia of non-model microbes. more...