txid207559[Organism] - GEO DataSets

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Select item 2000532261.

Comparative transcriptional analysis of Desulfovibrio alaskensis G20 grown under various syntrophic and fermentative conditions on pyruvate relative to respiratory growth

(Submitter supplied) Pyruvate fermentation pathway and energetics of Desulfovibrio alaskensis strain G20 under syntrophic coculture and fermentative monoculture conditions Expression data for Desulfovibrio alaskensis strain G20 grown in chemostats on pyruvate under respiratory conditions (sulfate-limited and pyruvate-limited monoculture, dilution rate 0.047 and 0.027 h-1), fermentative conditions (monoculture, dilution rate 0.036 h-1), and syntrophic conditions (coculture with Methanococcus maripaludis or Methanospirillum hungatei, dilution rate of 0.047 and 0.027 h-1)

Organism:: Oleidesulfovibrio alaskensis G20

Type:: Expression profiling by array

Platform:: GPL16334
16 Samples

Download data: FTR

Series

Accession:: GSE53226

ID:: 200053226

Select item 2000495302.

Functional genomics with a comprehensive library of transposon mutants for the sulfate-reducing bacterium Desulfovibrio alaskensis G20

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Oleidesulfovibrio alaskensis G20

Type:: Expression profiling by array

Platforms:: GPL16334 GPL17530
30 Samples

Download data: FTR

Series

Accession:: GSE49530

ID:: 200049530

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000495293.

Comparative transcriptional analysis of Desulfovibrio alaskensis G20 and regulator proteins mutants

(Submitter supplied) Expression data for Desulfovibrio alaskensis strain G20 and mutants in regulator proteins grown on lactate sulfate media. Pellets collected at mid-log growth phase. We aimed to confirm or expand the predicted regulons of each of the transposon interrupted regulator mutants.

Organism:: Oleidesulfovibrio alaskensis G20

Type:: Expression profiling by array

Platform:: GPL17530
12 Samples

Download data: FTR

Series

Accession:: GSE49529

ID:: 200049529

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000495284.

Comparative transcriptional analysis of Desulfovibrio alaskensis G20, a choline utilization regulator and LysX

(Submitter supplied) Expression data for Desulfovibrio alaskensis strain G20 and mutants in regulator proteins grown on lactate sulfate media and then pelleted and transferred to another media when they reached stationary phase. The Choline mutant was transferred to lacte/sulfate minimal media and choline/sulfate minimal media. The LysX mutant was transferred to minimal media with lysine and rich media. G20 was transferred to minimal media, choline/sulfate minimal media, lactate/choline/sulfate minimal media, minimal media with lysine, and rich media. more...

Organism:: Oleidesulfovibrio alaskensis G20

Type:: Expression profiling by array

Platform:: GPL17530
10 Samples

Download data: FTR

Series

Accession:: GSE49528

ID:: 200049528

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000495275.

Comparative transcriptional analysis of Desulfovibrio alaskensis G20 and mutants in regulator proteins grown in minimal media

Organism:: Oleidesulfovibrio alaskensis G20

Type:: Expression profiling by array

Platform:: GPL16334
8 Samples

Download data: FTR

Series

Accession:: GSE49527

ID:: 200049527

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000494846.

Identification of transcript starts in Desulfovibrio alaskensis G20

(Submitter supplied) 5' RNASeq of mRNA from G20 in defined lactate/sulfate media (LS4D)

Organism:: Oleidesulfovibrio alaskensis G20

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17525
1 Sample

Download data: WIG

Series

Accession:: GSE49484

ID:: 200049484

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000465477.

Influence of growth rate and methanogenic partner on syntrophic metabolism of Desulfovibrio G20 (comparative transcriptional analysis of Desulfovibrio G20 grown under various syntrophic conditions relative to respiratory growth)

(Submitter supplied) Expression data for Desulfovibrio alaskensis strain G20 grown on lactate in sulfate-limited monoculture and syntrophic coculture with Methanococcus maripaludis or Methanospirillum hungatei in chemostats at a low growth rate of 0.027h-1.

Organism:: Oleidesulfovibrio alaskensis G20

Type:: Expression profiling by array

Platform:: GPL16334
12 Samples

Download data: FTR

Series

Accession:: GSE46547

ID:: 200046547

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000425718.

Comparative transcriptional analysis of Desulfovibrio G20 grown under syntrophic and respiratory condtions

Organism:: Oleidesulfovibrio alaskensis G20

Type:: Expression profiling by array

Platform:: GPL16334
8 Samples

Download data: FTR

Series

Accession:: GSE42571

ID:: 200042571

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000394719.

High-resolution analysis of RNA expression in Desulfovbrio alaskensis G20

(Submitter supplied) High-resolution tiling analysis of the D. alaskensis G20 transcriptome in lactate/sulfate media, both rich (LS) and defined (LS4D)

Organism:: Oleidesulfovibrio alaskensis G20

Type:: Expression profiling by genome tiling array

Platform:: GPL15824
3 Samples

Download data: FTR, TXT

Series

Accession:: GSE39471

ID:: 200039471

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002128710.

Sulfate_Pyruvate_Desulfovibrio_G20

(Submitter supplied) In order to genetically determine the essential components of electron flow during respiration of sulfate by the anaerobe Desulfovibrio desulfuricans G20, a growth mode independent of sulfate is needed. However, a mutant of the G20 strain, I2, lacking the abundant type-1 tetraheme cytochrome c3 (TpI-c3), was found to be altered in growth with sulfate. Here we report that I2 does not reduce sulfate with electrons from pyruvate. more...

Organism:: Oleidesulfovibrio alaskensis G20

Type:: Expression profiling by array

Platform:: GPL10309
22 Samples

Download data: TXT

Series

Accession:: GSE21287

ID:: 200021287

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 10001753011.

NimbleGen Desulfovibrio alaskensis str. G20 12-plex [110215_Ddesul_strG20_JK_exp]

(Submitter supplied) 127,979 60-mer probes with different genic sequences in a 12-plex format. Native array description file: 110215_Ddesul_strG20_JK_exp.ndf Protocol: See manufacturer's website.

Organism:: Oleidesulfovibrio alaskensis G20

3 Series
22 Samples

Download data: NDF

Platform

Accession:: GPL17530

ID:: 100017530

Select item 10001752512.

Illumina Genome Analyzer II (Desulfovibrio alaskensis G20)

Organism:: Oleidesulfovibrio alaskensis G20

1 Series
1 Sample

Download data

Platform

Accession:: GPL17525

ID:: 100017525

Select item 10001633413.

NimbleGen Custom Desulfovibrio alaskensis str. G20 4-plex [080626_Ddes_G20_EXP]

(Submitter supplied) 67,194 60-mer probes with 33,414 different genic sequences in a 4-plex format native array description file: 080626_Ddes_G20_EXP.ndf Protocol: 60 nt probes

Organism:: Oleidesulfovibrio alaskensis G20

5 Series
44 Samples

Download data: NDF

Platform

Accession:: GPL16334

ID:: 100016334

Select item 10001582414.

NimbleGen Custom Desulfovibrio alaskensis G20 Tiling [NimbleGen_G20_2082K_1]

(Submitter supplied) NC_007519 100318_DdesG20_JK_EXP_HX1.ndf Protocol: see NimbleBen website

Organism:: Oleidesulfovibrio alaskensis G20

1 Series
3 Samples

Download data: NDF

Platform

Accession:: GPL15824

ID:: 100015824

Select item 10001030915.

ORNL DesulfovibrioG20 3.8k Array

(Submitter supplied) Desulfovibrio G20 Protocol: ORNL internal protocol. The probes were designed and the arrays printed at ORNL.

Organism:: Oleidesulfovibrio alaskensis G20

1 Series
22 Samples

Download data

Platform

Accession:: GPL10309

ID:: 100010309

Select item 30128799216.

Pyruvate-sulfate mono with sulfate in excess [C96_.027]

Organism:: Oleidesulfovibrio alaskensis G20

Source name:: Pyruvate-sulfate mono with sulfate in excess

Platform:: GPL16334
Series:: GSE53226

Download data: FTR

Sample

Accession:: GSM1287992

ID:: 301287992

Select item 30128799117.

Pyruvate-sulfate mono with sulfate in excess [C95_.027]

Organism:: Oleidesulfovibrio alaskensis G20

Source name:: Pyruvate-sulfate mono with sulfate in excess

Platform:: GPL16334
Series:: GSE53226

Download data: FTR

Sample

Accession:: GSM1287991

ID:: 301287991

Select item 30128799018.

Pyruvate-sulfate mono with sulfate in excess [C96_.047]

Organism:: Oleidesulfovibrio alaskensis G20

Source name:: Pyruvate-sulfate mono with sulfate in excess

Platform:: GPL16334
Series:: GSE53226

Download data: FTR

Sample

Accession:: GSM1287990

ID:: 301287990

Select item 30128798919.

Pyruvate-sulfate mono with sulfate in excess [C95_.047]

Organism:: Oleidesulfovibrio alaskensis G20

Source name:: Pyruvate-sulfate mono with sulfate in excess

Platform:: GPL16334
Series:: GSE53226

Download data: FTR

Sample

Accession:: GSM1287989

ID:: 301287989

Select item 30128798820.

Pyruvate fermentation monoculture [C94_.036]

Organism:: Oleidesulfovibrio alaskensis G20

Source name:: Pyruvate fermentation monoculture

Platform:: GPL16334
Series:: GSE53226

Download data: FTR

Sample

Accession:: GSM1287988

ID:: 301287988

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txid207559[Organism] (107)
GEO DataSets
PREDICTED: Homo sapiens STT3 oligosaccharyltransferase complex catalytic subunit...
PREDICTED: Homo sapiens STT3 oligosaccharyltransferase complex catalytic subunit B (STT3B), transcript variant X2, mRNA
gi|2462587969|ref|XM_054345640.1|

Nucleotide
RecName: Full=Coiled-coil domain-containing protein 180
RecName: Full=Coiled-coil domain-containing protein 180
gi|1476413364|sp|Q9P1Z9.3|CC180_HUM

Protein
Phosphoenolpyruvate Carboxykinase (GTP)
Phosphoenolpyruvate Carboxykinase (GTP)
An enzyme of the lyase class that catalyzes the conversion of GTP and oxaloacetate to GDP, phosphoenolpyruvate, and carbon dioxide. This reaction is part of gluconeogenesis in...<br/>Year introduced: 1998(1973)

MeSH
AlkB Homolog 8, tRNA Methyltransferase
AlkB Homolog 8, tRNA Methyltransferase
A dioxygenase and alkylation repair homolog that catalyzes the methylation of 5-carboxymethyl URIDINE to 5-methylcarboxymethyl uridine at the wobble position of the ANTICODON ...<br/>Year introduced: 2017

MeSH

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