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Items: 1 to 20 of 17468

1.

Differential transcriptome reprogramming induced by the soybean cyst nematode Type 0 and Type 1.2.5.7 during resistant and susceptible interactions

(Submitter supplied) To investigate the effect of genotype on soybean transcriptomic response to different soybean cyst nematode races
Organism:
Glycine max
Type:
Expression profiling by high throughput sequencing
Platform:
GPL28801
18 Samples
Download data: XLSX
Series
Accession:
GSE233370
ID:
200233370

PubMed Similar studies

2.

Changes of transcriptome in Alfalfa (Medicago sativa L.) under selenium treatment

(Submitter supplied) We studied the application of transcriptome technology in alfalfa selenium treatment. After spraying sodium selenite on the leaves, the process of selenium absorption and assimilation of alfalfa is unknown. The time point of transcriptome determination was determined by measuring the change of selenium content. Our results showed that 12 h was the key point of the change of selenium content in alfalfa, that is, the selenium content increased continuously before 12 h, decreased gradually after 12 h, and remained stable after 48 h. more...
Organism:
Medicago sativa
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30915
9 Samples
Download data: TXT
Series
Accession:
GSE186868
ID:
200186868

SRA Run Selector

3.

Identification of GLYMA.08G227700 binding sites in soybean cotyledon stage embryos

(Submitter supplied) To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.08G227700 in early maturation embryos using ChIP-seq.
Organism:
Glycine max
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL28801
4 Samples
Download data: NARROWPEAK
Series
Accession:
GSE253104
ID:
200253104

4.

Dissecting the temporal genetic networks programming soybean embryo development from embryonic morphogenesis to post-germination

(Submitter supplied) To understand the molecular events underlying seed desiccation and germination, we performed transcriptome analysis of soybean (Glycine max) embryos at three seed developmental stages (early, mid and late desiccation), mature dry seeds, and three germination stages (3, 16 and 27 hour-after-imbibition).
Organism:
Glycine max
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL26488 GPL28801
46 Samples
Download data: TXT
Series
Accession:
GSE248224
ID:
200248224

5.

Identification of exosome-like nanovesicle (ENV) associated miRNAs in edible plants

(Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNAs between 18-23nts in size which regulate the translation and stability of target mRNAs. miRNAs are present in dietary plants and are conventionally thought to be degraded during the gastrointestinal digestion process. Recent reports suggest that a few dietary microRNAs may exhibit resistance to this process, enter systemic circulation and exert biological effects on animal physiology, currently known as cross-kingdom regulation. more...
Organism:
Emblica officinalis; Glycine max; Allium sativum; Curcuma longa
Type:
Non-coding RNA profiling by high throughput sequencing
4 related Platforms
8 Samples
Download data: XLSX
Series
Accession:
GSE246292
ID:
200246292

6.

Single-cell Multiomic profiling of soybean cotyledon-stage seeds

(Submitter supplied) To understand the processes governing soybean seed development, we profiled the mRNA transcriptome and chromatin accessibility of cotyledon-stage seeds at the single-nucleus level.
Organism:
Glycine max
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL28801
2 Samples
Download data: BED, H5, MTX, TSV
Series
Accession:
GSE243174
ID:
200243174

7.

Small (non coding) RNA profiling in water- versus Xcf-inoculated common bean seeds at two developmental stages

(Submitter supplied) Transcriptome approach of small RNA was performed at two stages of seed development during early maturation (24DAP) and seed maturity (42DAP) to differentially profile smallRNA accumulation from Xcf-inoculated and water-inoculated seeds.
Organism:
Phaseolus vulgaris
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL33228
12 Samples
Download data: TXT
Series
Accession:
GSE226920
ID:
200226920

PubMed Similar studies

8.

Methylome analysis of water- versus Xcf-inoculated common bean seeds at seed maturity stage

(Submitter supplied) DNA Methylation profiling was performed at seed maturity to compare between seed methylomes from Xcf-inoculated and water-inoculated seeds.
Organism:
Phaseolus vulgaris
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL33227
6 Samples
Download data: BW
Series
Accession:
GSE226919
ID:
200226919

PubMed Similar studies

9.

Transcriptomic analysis of water- versus Xcf-inoculated common bean seeds at three developmental stages

(Submitter supplied) transcriptome approach was performed at three stages of seed development during seed filling, seed maturation and seed maturity to compare between seed transcriptomes from Xcf-inoculated and water-inoculated seeds.
Organism:
Phaseolus vulgaris
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24868
18 Samples
Download data: CSV
Series
Accession:
GSE226918
ID:
200226918

PubMed Similar studies

10.

Transcriptomic dataset of Phaseolus vulgaris leaves in response to the inoculation of pathogenic Xanthomonas citri pv. fuscans and its type 3 secretion system-defective mutant hrcV.

(Submitter supplied) Common Bacterial Blight (CBB) is a major threat to bean crops caused by Xanthomonas citri pv. fuscans (Xcf). The pathogenicity of Xcf is known to be dependent upon a functional Type 3 Secretion System (T3SS), that allows the injection of numerous Type III Effectors (T3Es) into plant cells. We generated a transcriptomic dataset to compare the response of susceptible and resistant cultivars of Phaseolus vulgaris to the inoculation of the virulent strain Xcf CFBP4885 or its avirulent T3SS-defective hrcV mutant (CFBP13802). more...
Organism:
Phaseolus vulgaris
Type:
Expression profiling by high throughput sequencing
Platform:
GPL33227
36 Samples
Download data: TXT
Series
Accession:
GSE271236
ID:
200271236

11.

Circadian Clock Regulation in Soybean Senescence: A Transcriptome Analysis of Early and Late Senescence Types

(Submitter supplied) We obtained early-senescence (ES)- and late-senescence (LS)-type F7 plants from a cross between a hybrid (Glycine max × Glycine soja) and the Glycine max cultivar. The ES-type plants presented the reproductive (R2) growth stage at 50 days after sowing (DAS) and the R7 growth stage at 95 DAS, whereas the LS-type plants presented the beginning of the R1 and R6 growth stages at 50 and 95 DAS, respectively. more...
Organism:
Glycine max
Type:
Expression profiling by high throughput sequencing
Platform:
GPL15008
2 Samples
Download data: TXT
Series
Accession:
GSE275263
ID:
200275263

12.

Differential compatibilities between rhizobium strains and cultivated and wild soybeans revealed by anatomical and RNA-seq analyses.

(Submitter supplied) Various species of rhizobium establish compatible symbiotic relationships with soybean (Glycine max) leading to the formation of nitrogen-fixing nodules in roots. The formation of functional nodules is mediated through complex developmental and transcriptional reprogramming that involves the activity of thousands of plant genes. However, host transcriptome responses that determine the outcome of the symbiotic interactions leading to the formation of functional or non-functional nodules remain unexplored. more...
Organism:
Glycine soja; Glycine max
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL34481 GPL28801
12 Samples
Download data: TXT
Series
Accession:
GSE267634
ID:
200267634

PubMed Full text in PMC Similar studies

13.

Transcriptome data of compatible soybean host inoculated with Sinorhizobium fredii with variants of NopP and NopI

(Submitter supplied) Nodulation Outer Protein P (NopP) and NopI of the type 3 secretion system (T3SS) of the rhizobium determine host specificity. Sinorhizobium fredii CCBAU25509 (R2) and CCBAU45436 (R4) have different NopP and NopI variants, affecting their respective symbiotic compatibilities with the cultivated soybean C08 and the wild soybean W05. Swapping the NopP variants between R2 and R4 has been shown to switch their compatibility with C08 with the rj2/Rfg1 genotype. more...
Organism:
Glycine max
Type:
Expression profiling by high throughput sequencing
Platform:
GPL28801
45 Samples
Download data: TSV
Series
Accession:
GSE274768
ID:
200274768

14.

Functional genomics identifies a small secreted protein that plays a role during the biotrophic to necrotrophic shift in the root rot pathogen Phytophthora medicaginis

(Submitter supplied) Introduction: Hemibiotrophic Phytophthora are a group of agriculturally and ecologically important pathogenic oomycetes causing severe decline in plant growth and fitness. The lifestyle of these pathogens consists of an initial biotrophic phase followed by a switch to a necrotrophic phase in the latter stages of infection. Between these two phases is the biotrophic to necrotrophic switch (BNS) phase, the timing and controls of which are not well understood particularly in Phytophthora spp. more...
Organism:
Cicer arietinum; Phytophthora medicaginis
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL30598 GPL33212
22 Samples
Download data: TXT
Series
Accession:
GSE183604
ID:
200183604

PubMed Full text in PMC Similar studies SRA Run Selector

15.

Comparative Analysis Highlights Uniconazole’s Efficacy in Enhancing the Cold Stress Tolerance of Mung Beans by Targeting Photosynthetic Pathways

(Submitter supplied) Soybean (Glycine max) and mung bean (Vigna radiata) are key legumes with global importance, but their mechanisms for coping with cold stress—a major challenge in agriculture—have not been thoroughly investigated, especially in a comparative study. This research aimed to fill this gap by examining how these two major legumes respond differently to cold stress and exploring the role of uniconazole, a potential stress mitigator. more...
Organism:
Vigna radiata
Type:
Expression profiling by high throughput sequencing
Platform:
GPL31193
9 Samples
Download data: CSV
Series
Accession:
GSE193328
ID:
200193328

PubMed Full text in PMC Similar studies

16.

miRNAs regulated systemically by nitrogen availability in shoots and roots of Medicago truncatula

(Submitter supplied) Using a dedicated split-root approach, we identified miRNAs regulated systemically by nitrogen availability in both shoots and roots of the Medicago truncatula model legume, depending on the CRA2 pathway, highlighting the phosphate-related miR399.
Organism:
Medicago truncatula
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL30272
24 Samples
Download data: TSV
Series
Accession:
GSE247405
ID:
200247405

PubMed Similar studies

17.

Contrasting defence mechanisms against spider mite infestation in Cyanogenic and Non-Cyanogenic legumes

(Submitter supplied) Understanding the complex interactions between plants and herbivores is essential for improving crop resistance. To deep into the role of cyanogenesis in plant defence, we investigated the response of the cyanogenic Phaseolus lunatus (lima bean) and the non-cyanogenic Phaseolus vulgaris (common bean) to Tetranychus urticae infestation. Despite spider mite infesting both legumes, severity of leaf damage was reduced in lima bean. more...
Organism:
Phaseolus lunatus; Phaseolus vulgaris
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL34090 GPL18673
12 Samples
Download data: TXT
Series
Accession:
GSE253336
ID:
200253336

PubMed Similar studies

18.

Soybean cell atlas gene expression profile

(Submitter supplied) The nuclei of Glycine max from different tissues were collected. The samples were: soybean seed mid-maturation stage (10mm), seed late cotyledon stage (5mm), seed early cotyledon stage (3mm), seed heart stage (1mm), soybean green pods without seeds (stage), soybean flower bud (early flowering stage), soybean shoot apical meristem (stage), soybean trifoliate leaf (R5 stage), and soybean true leave (stage). more...
Organism:
Glycine max
Type:
Expression profiling by high throughput sequencing
Platform:
GPL28801
18 Samples
Download data: MTX, TSV
Series
Accession:
GSE234864
ID:
200234864

19.

Gene expression profile at single cell level from Glycine max nodules and roots.

(Submitter supplied) The nuclei of Glycine max root seedlings (6 days-old) and nodules (28 days-old) were isolated and the library consstruction was performed applying 10x Genomics tecnology.
Organism:
Glycine max
Type:
Expression profiling by high throughput sequencing
Platform:
GPL28801
5 Samples
Download data: MTX, TSV
Series
Accession:
GSE226149
ID:
200226149

PubMed Full text in PMC Similar studies

20.

A spatially resolved multiomic single-cell atlas of soybean development

(Submitter supplied) Cis-regulatory elements (CREs) precisely control the spatiotemporal gene expression in cells. Using a spatially resolved single-cell atlas of gene expression and chromatin accessibility across ten soybean tissues, we identified 103 distinct cell types and 303,199 accessible chromatin regions (ACRs). Nearly 40% of ACRs showed cell-type-specific patterns and were enriched for transcription factor (TF) binding motifs controlling cell-type specification and maintenance. more...
Organism:
Glycine max
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other
Platform:
GPL28801
59 Samples
Download data: CSV, JPG, JSON, PNG, RDS, TXT
Series
Accession:
GSE270392
ID:
200270392

PubMed Full text in PMC Similar studies

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