GEO DataSets

(Submitter supplied) Fleshy fruits evolved independently multiple times during angiosperm history, including the use of ethylene for the initiation and maintenance of ripening. ENCODE data of 355 transcriptome, 66 accessible chromatin, 160 histone and 45 DNA methylation profiles from eleven fleshy fruit species revealed three types of transcriptional feedback loops controlling ripening. Eudicots peach, papaya and melon evolved their circuits using carpel senescence NAC genes, whereas tomato, apple and pear utilized floral identity MADS genes derived from recent whole-genome-duplications. more...

Organism:

Citrullus lanatus; Cucumis melo; Cucumis sativus; Arabidopsis thaliana; Malus domestica; Solanum lycopersicum; Musa acuminata AAA Group; Carica papaya; Prunus persica; Oryza sativa; Fragaria vesca; Pyrus x bretschneideri; Vitis vinifera

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

18 related Platforms

282 Samples

Download data: BW, NARROWPEAK, TBI, TXT

(Submitter supplied) Meyerozyma guilliermondii, which was isolated from pears by our laboratory, M. guilliermondii had a significant effect on the induction of several defense-related genes compared to the control. It revealed the defense response mechanism of pears by transcriptomics, and investigated the function of more defense-related genes in pears.

Organism:

Pyrus x bretschneideri

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24323

2 Samples

Download data: TXT

(Submitter supplied) Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare miRNA expressions of pear in two different conditions.

Organism:

Pyrus x bretschneideri; Pyrus x bretschneideri x Pyrus pyrifolia

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL21787 GPL21788

2 Samples

Download data: TXT

(Submitter supplied) Although pear is an important edible fruit species, the current available genomic information is limited. Combining the Solexa/ Illumina RNA-seq high-throughput sequencing approach with Digital Gene Expression (DGE) analysis results in a powerful transcriptomic study. This publication reports the transcriptome profiling analysis of Pyrus bretschneideri Rehd. using RNA-seq and DGE in order to better understand the molecular mechanisms underlying biological aspects of pear, especially fruit development and maturation.Using high-throughput Illumina RNA-seq combined with a tag-based Digital Gene Expression (DGE) system, de novo transcriptome assembly and gene expression analysis of P. more...

Organism:

Pyrus x bretschneideri

Type:

Expression profiling by high throughput sequencing

Platform:

GPL14823

5 Samples

Download data: TXT