txid236[Organism] - GEO DataSets - NCBI

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Select item 2002621831.

A Brucella ovis HWE histidine kinase is important for detergent resistance.

(Submitter supplied) Through a system-level analysis of non-essential two-component signal transduction systems (TCS) genes in Brucella ovis, we have discovered that deletion of an HWE histidine kinase, BOV_1602, leads to significant increase in resistance to SDS detergent and other anionic or zwitterionic detergents. To better understand this detergent resistance phenotype, we performed RNA-seq experiment using both WT and ∆BOV_1602 cultured on no stress (TASB) or TSAB supplemented with 0.004% SDS.

Organism:: Brucella ovis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33317
12 Samples

Download data: XLSX

Series

Accession:: GSE262183

ID:: 200262183

Select item 2002291832.

A unique mode of cross regulation in a cell envelope stress signaling system

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Brucella ovis

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL33317
19 Samples

Series

Accession:: GSE229183

ID:: 200229183

PubMed Full text in PMC Similar studies

Select item 2002291813.

A unique mode of cross regulation in a cell envelope stress signaling system [RNA-seq]

(Submitter supplied) A multi-layered structure known as the cell envelope separates the controlled interior of Gram-negative bacteria from a fluctuating physical and chemical environment. Transcription of genes that determine cell envelope structure and function is commonly controlled by a class of environmental regulators known as two-component signal transduction systems (TCS), which are comprised of 1) sensor histidine kinases and 2) response regulators. more...

Organism:: Brucella ovis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33317
9 Samples

Download data: XLSX

Series

Accession:: GSE229181

ID:: 200229181

PubMed Full text in PMC Similar studies

Select item 2002291204.

A unique mode of cross regulation in a cell envelope stress signaling system [ChIP-seq]

(Submitter supplied) A multi-layered structure known as the cell envelope separates the controlled interior of Gram-negative bacteria from a fluctuating physical and chemical environment. Transcription of genes that determine cell envelope structure and function is commonly controlled by a class of environmental regulators known as two-component signal transduction systems (TCS), which are comprised of 1) sensor histidine kinases and 2) response regulators. more...

Organism:: Brucella ovis

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL33317
10 Samples

Download data: CSV

Series

Accession:: GSE229120

ID:: 200229120

PubMed Full text in PMC Similar studies

Select item 2001306785.

Transcriptional profiling of Brucella ovis strains cultivated in the presence of high (5%) and low (0.04%) CO2

(Submitter supplied) Wild-type Brucella ovis ATCC 25840 requires the addition of 5% CO2 to the atmosphere to grow on either nutrient agar plates or in liquid broth culture. The goal of this study was to measure the transcriptional response of two Brucella ovis strains under high (5%) and low (0.04%) CO2. The two strains assayed were 1) wild-type and 2) a spontaneous mutant that can be cultivated in standard atmospheric levels of CO2 (~0.04%). more...

Organism:: Brucella ovis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26618
10 Samples

Download data: TXT

Series

Accession:: GSE130678

ID:: 200130678

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000345046.

Differential Expression of Iron Acquisition Genes by Brucella melitensis and Brucella canis During Macrophage Infection

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Brucella canis; Brucella ovis; Brucella melitensis; Brucella melitensis bv. 1 str. 16M

Type:: Expression profiling by array

Platforms:: GPL15024 GPL15023
16 Samples

Download data: CALLS, PAIR

Series

Accession:: GSE34504

ID:: 200034504

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000345037.

Differential Expression of Iron Acquisition Genes by Brucella melitensis and Brucella canis During Macrophage Infection (part 4)

(Submitter supplied) Brucella melitensis and Brucella canis differ by ~75 genes yet B. melitensis is highly virulent for humans while B. canis is considered rarely pathogenic. No identified bacterial factors or mechanisms account for this difference in virulence. To identify functional differences of these two bacteria, gene transcription was examined during infection of murine macrophages and compared to bacteria grown in broth. more...

Organism:: Brucella ovis; Brucella canis

Type:: Expression profiling by array

Platform:: GPL15024
4 Samples

Download data: CALLS, PAIR

Series

Accession:: GSE34503

ID:: 200034503

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000345018.

Differential Expression of Iron Acquisition Genes by Brucella melitensis and Brucella canis During Macrophage Infection (part 3)

(Submitter supplied) Brucella melitensis and Brucella canis differ by ~75 genes yet B. melitensis is highly virulent for humans while B. canis is considered rarely pathogenic. No identified bacterial factors or mechanisms account for this difference in virulence. To identify functional differences of these two bacteria, gene transcription was examined during infection of murine macrophages and compared to bacteria grown in broth. more...

Organism:: Brucella canis; Brucella ovis

Type:: Expression profiling by array

Platform:: GPL15024
4 Samples

Download data: CALLS, PAIR

Series

Accession:: GSE34501

ID:: 200034501

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000344989.

Differential Expression of Iron Acquisition Genes by Brucella melitensis and Brucella canis During Macrophage Infection (part 2)

(Submitter supplied) Brucella melitensis and Brucella canis differ by ~75 genes yet B. melitensis is highly virulent for humans while B. canis is considered rarely pathogenic. No identified bacterial factors or mechanisms account for this difference in virulence. To identify functional differences of these two bacteria, gene transcription was examined during infection of murine macrophages and compared to bacteria grown in broth. more...

Organism:: Brucella ovis; Brucella canis

Type:: Expression profiling by array

Platform:: GPL15024
4 Samples

Download data: CALLS, PAIR

Series

Accession:: GSE34498

ID:: 200034498

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 10003331710.

NextSeq 2000 (Brucella ovis)

Organism:: Brucella ovis

4 Series
31 Samples

Platform

Accession:: GPL33317

ID:: 100033317

Select item 10002661811.

Illumina HiSeq 4000 (Brucella ovis)

Organism:: Brucella ovis

1 Series
10 Samples

Platform

Accession:: GPL26618

ID:: 100026618

Select item 10001502412.

NimbleGen Brucella ovis array 2.9K v1.0

(Submitter supplied) Microarray design and experimentation were made by NimbleGen Systems, INC from catalogue design for B. ovis chromosomes I (NC_009505.1) and II (NC_009504.1) with 20 probes per gene (10 perfect matches and 10 mismatches). Each probe (60 mer) was replicated three times on chip (design includes random GC probes). Triplicate samples of each strain were mixed and one chip was made per strain.

Organism:: Brucella ovis

4 Series
12 Samples

Download data: NCD, NDF, NGD

Platform

Accession:: GPL15024

ID:: 100015024

Select item 30815923713.

∆BOV_1602_SDS replicate 3 [1602_453_S36]

Organism:: Brucella ovis

Source name:: B. ovis cells

Platform:: GPL33317
Series:: GSE262183

Sample

Accession:: GSM8159237

ID:: 308159237

SRA Run Selector

Select item 30815923614.

∆BOV_1602_SDS replicate 2 [1602_452_S35]

Organism:: Brucella ovis

Source name:: B. ovis cells

Platform:: GPL33317
Series:: GSE262183

Sample

Accession:: GSM8159236

ID:: 308159236

SRA Run Selector

Select item 30815923515.

∆BOV_1602_SDS replicate 1 [1602_451_S34]

Organism:: Brucella ovis

Source name:: B. ovis cells

Platform:: GPL33317
Series:: GSE262183

Sample

Accession:: GSM8159235

ID:: 308159235

SRA Run Selector

Select item 30815923416.

WT_SDS replicate 3 [WT_450_S33]

Organism:: Brucella ovis

Source name:: B. ovis cells

Platform:: GPL33317
Series:: GSE262183

Sample

Accession:: GSM8159234

ID:: 308159234

SRA Run Selector

Select item 30815923317.

WT_SDS replicate 2 [WT_449_S32]

Organism:: Brucella ovis

Source name:: B. ovis cells

Platform:: GPL33317
Series:: GSE262183

Sample

Accession:: GSM8159233

ID:: 308159233

SRA Run Selector

Select item 30815923218.

WT_SDS replicate 1 [WT_448_S31]

Organism:: Brucella ovis

Source name:: B. ovis cells

Platform:: GPL33317
Series:: GSE262183

Sample

Accession:: GSM8159232

ID:: 308159232

SRA Run Selector

Select item 30815923119.

∆BOV_1602 replicate 3 [1602_444_S27]

Organism:: Brucella ovis

Source name:: B. ovis cells

Platform:: GPL33317
Series:: GSE262183

Sample

Accession:: GSM8159231

ID:: 308159231

SRA Run Selector

Select item 30815923020.

∆BOV_1602 replicate 2 [1602_443_S26]

Organism:: Brucella ovis

Source name:: B. ovis cells

Platform:: GPL33317
Series:: GSE262183

Sample

Accession:: GSM8159230

ID:: 308159230

SRA Run Selector

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txid236[Organism] (53)
GEO DataSets
GDP-fucose protein O-fucosyltransferase 2 isoform X3 [Homo sapiens]
GDP-fucose protein O-fucosyltransferase 2 isoform X3 [Homo sapiens]
gi|2217337453|ref|XP_047296678.1|

Protein
GDP-fucose protein O-fucosyltransferase 2 isoform X15 [Homo sapiens]
GDP-fucose protein O-fucosyltransferase 2 isoform X15 [Homo sapiens]
gi|2462582361|ref|XP_054180377.1|

Protein
SAMEA3529258 (1)
SRA
odorant receptor 42 [Psyttalia incisi]
odorant receptor 42 [Psyttalia incisi]
gi|2508696870|gb|WHS04445.1|

Protein

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