GEO DataSets

(Submitter supplied) We describe an application of deep sequencing and de novo assembly of short RNA reads to investigate small interfering (si)RNAs mediated immunity in leaf samples from eight tree taxa naturally occurring in Wytham Woods, Oxfordshire, UK. BLAST search for homologues of contigs in the GenBank identified siRNA populations against a number of RNA viruses and a Ty1-copia retrotransposons in these tree species.

Organism:

Fagus sylvatica; Fraxinus excelsior; Aesculus hippocastanum; Tilia platyphyllos; Corylus avellana; Quercus robur; Betula pendula; Acer pseudoplatanus; Ulmus glabra

Type:

Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL10476 GPL10477

4 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Fagus sylvatica

Type:

Expression profiling by array

Platform:

GPL8922

147 Samples

Download data: TXT

(Submitter supplied) Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses were conducted on leaves from trees grown in the field under ambient and twice-ambient ozone concentrations at Kranzberger Forst (Bavarian). more...

Organism:

Fagus sylvatica

Type:

Expression profiling by array

Platform:

GPL8922

12 Samples

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(Submitter supplied) Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses were conducted on leaves from trees grown in the field under ambient and twice-ambient ozone concentrations at Kranzberger Forst (Bavarian). more...

Organism:

Fagus sylvatica

Type:

Expression profiling by array

Platform:

GPL8922

20 Samples

Download data

(Submitter supplied) Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses were conducted on leaves from trees grown in the field under ambient and twice-ambient ozone concentrations at Kranzberger Forst (Bavarian). more...

Organism:

Fagus sylvatica

Type:

Expression profiling by array

Platform:

GPL8922

20 Samples

Download data

(Submitter supplied) Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses were conducted on leaves from trees grown in the field under ambient and twice-ambient ozone concentrations at Kranzberger Forst (Bavarian). more...

Organism:

Fagus sylvatica

Type:

Expression profiling by array

Platform:

GPL8922

16 Samples

Download data

(Submitter supplied) Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses were conducted on leaves from trees grown in the field under ambient and twice-ambient ozone concentrations at Kranzberger Forst (Bavarian). more...

Organism:

Fagus sylvatica

Type:

Expression profiling by array

Platform:

GPL8922

20 Samples

Download data

(Submitter supplied) Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses were conducted on leaves from trees grown in the field under ambient and twice-ambient ozone concentrations at Kranzberger Forst (Bavarian). more...

Organism:

Fagus sylvatica

Type:

Expression profiling by array

Platform:

GPL8922

19 Samples

Download data

(Submitter supplied) Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses were conducted on leaves from trees grown in the field under ambient and twice-ambient ozone concentrations at Kranzberger Forst (Bavarian). more...

Organism:

Fagus sylvatica

Type:

Expression profiling by array

Platform:

GPL8922

20 Samples

Download data

(Submitter supplied) Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses were conducted on leaves from trees grown in the field under ambient and twice-ambient ozone concentrations at Kranzberger Forst (Bavarian). more...

Organism:

Fagus sylvatica

Type:

Expression profiling by array

Platform:

GPL8922

20 Samples

Download data

(Submitter supplied) Slides were coated with aldehydes. Protocol: Spotting buffer: 3xSSC+ 1,5MBetain Spotting plate setting: 384-well Mikrotiterplatte, Greiner bio-one, Frickenhausen Arrayer Hardware: Micro Grid II, BioRobotic, Cambridge, GB

Organism:

Fagus sylvatica

9 Series

147 Samples

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