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Items: 4

1.

De novo assembly of siRNA immunity in wild plants

(Submitter supplied) We describe an application of deep sequencing and de novo assembly of short RNA reads to investigate small interfering (si)RNAs mediated immunity in leaf samples from eight tree taxa naturally occurring in Wytham Woods, Oxfordshire, UK. BLAST search for homologues of contigs in the GenBank identified siRNA populations against a number of RNA viruses and a Ty1-copia retrotransposons in these tree species.
Organism:
Corylus avellana; Quercus robur; Fagus sylvatica; Fraxinus excelsior; Aesculus hippocastanum; Tilia platyphyllos; Betula pendula; Acer pseudoplatanus; Ulmus glabra
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL10476 GPL10477
4 Samples
Download data: TXT
Series
Accession:
GSE22079
ID:
200022079

SRA Run Selector

2.

Illumina Genome Analyzer II (Acer pseudoplatanus; Aesculus hippocastanum; Betula pendula; Fagus sylvatica; Fraxinus excelsior; Quercus robur; Tilia platyphyllos)

Organism:
Betula pendula; Acer pseudoplatanus; Fagus sylvatica; Fraxinus excelsior; Quercus robur; Aesculus hippocastanum; Tilia platyphyllos
1 Series
2 Samples
Download data
Platform
Accession:
GPL10476
ID:
100010476

3.

sRNA_s_4

Organism:
Quercus robur; Aesculus hippocastanum; Betula pendula; Tilia platyphyllos; Acer pseudoplatanus; Fagus sylvatica; Fraxinus excelsior
Source name:
pooled leaves from various tree species
Platform:
GPL10476
Series:
GSE22079
Download data: TXT
Sample
Accession:
GSM548933
ID:
300548933

SRA Run Selector

4.

sRNA_s_3

Organism:
Betula pendula; Tilia platyphyllos; Fagus sylvatica; Acer pseudoplatanus; Aesculus hippocastanum; Fraxinus excelsior; Quercus robur
Source name:
pooled leaves from various tree species
Platform:
GPL10476
Series:
GSE22079
Download data: TXT
Sample
Accession:
GSM548932
ID:
300548932

SRA Run Selector

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db=gds|term=txid3505[Organism]|query=1|qty=10|blobid=MCID_67279b8e9f58a2614710431c|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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