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Items: 10

1.

Next Generation Sequencing of tomato germplasm for cold tolerance and yield studies

(Submitter supplied) Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goal of this study is genome wide association mapping for cold tolerance and yield studies in tomato (Solanum spp.) by phenotyping the genotypes under six diffrent temporal arrangments. Also for conducting quantitative reverse transcription polymerase chain reaction (qRT–PCR) assay of cold tolerant genes.
Organism:
Solanum chilense; Solanum lycopersicum var. cerasiforme; Solanum peruvianum; Solanum pimpinellifolium; Solanum lycopersicum; Solanum habrochaites
Type:
Genome variation profiling by high throughput sequencing
6 related Platforms
50 Samples
Download data: VCF
Series
Accession:
GSE200034
ID:
200200034

2.

Dissection of the style’s response to pollination using transcriptome profiling in self-compatible (Solanum pimpinellifolium) and self-incompatible (Solanum chilense) tomato species

(Submitter supplied) Background: Tomato (Solanum lycopersicum) self-compatibility (SC) is defined as self-pollen tubes that can penetrate their own stigma, elongate in the style and fertilize their own ovules. Self-incompatibility (SI) is defined as self-pollen tubes that are prevented from developing in the style. To determine the influence of gene expression on style self-pollination, a transcriptome-wide comparative analysis of SC and SI tomato unpollinated/pollinated styles was performed using RNA-sequencing (RNA-seq) data. more...
Organism:
Solanum chilense; Solanum pimpinellifolium
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL20002 GPL20003
12 Samples
Download data: XLSX
Series
Accession:
GSE67654
ID:
200067654

PubMed Full text in PMC Similar studies SRA Run Selector

3.

Illumina HiSeq 2500 (Solanum chilense)

Organism:
Solanum chilense
2 Series
7 Samples
Download data
Platform
Accession:
GPL20003
ID:
100020003

4.

WIR-5032

Organism:
Solanum chilense
Source name:
Leaf
Platform:
GPL20003
Series:
GSE200034
Download data
Sample
Accession:
GSM6005069
ID:
306005069

SRA Run Selector

5.

SIP3

Organism:
Solanum chilense
Source name:
Styles
Platform:
GPL20003
Series:
GSE67654
Download data
Sample
Accession:
GSM1652857
ID:
301652857

SRA Run Selector

6.

SIP2

Organism:
Solanum chilense
Source name:
Styles
Platform:
GPL20003
Series:
GSE67654
Download data
Sample
Accession:
GSM1652856
ID:
301652856

SRA Run Selector

7.

SIP1

Organism:
Solanum chilense
Source name:
Styles
Platform:
GPL20003
Series:
GSE67654
Download data
Sample
Accession:
GSM1652855
ID:
301652855

SRA Run Selector

8.

SIUP3

Organism:
Solanum chilense
Source name:
Styles
Platform:
GPL20003
Series:
GSE67654
Download data
Sample
Accession:
GSM1652854
ID:
301652854

SRA Run Selector

9.

SIUP2

Organism:
Solanum chilense
Source name:
Styles
Platform:
GPL20003
Series:
GSE67654
Download data
Sample
Accession:
GSM1652853
ID:
301652853

SRA Run Selector

10.

SIUP1

Organism:
Solanum chilense
Source name:
Styles
Platform:
GPL20003
Series:
GSE67654
Download data
Sample
Accession:
GSM1652852
ID:
301652852

SRA Run Selector

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db=gds|term=txid4083[Organism]|query=7|qty=7|blobid=MCID_672d7cf55614fa636730ff4b|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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