txid613[Organism] - GEO DataSets

Search results

Items: 1 to 20 of 229

<< First< Prev

Page of 12

Select item 2002517831.

Drosophila and Commensal Bacteria Synergistically Compete with Opportunistic Pathogens at Bulk and Single-Cell Resolutions

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Serratia marcescens; Lactiplantibacillus plantarum

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL33401 GPL30015 GPL34033
30 Samples

Download data: MTX, TSV, TXT

Series

Accession:: GSE251783

ID:: 200251783

Select item 2002517822.

Drosophila and Commensal Bacteria Synergistically Compete with Opportunistic Pathogens at Bulk and Single-Cell Resolutions [scRNA-seq]

(Submitter supplied) A challenging task to reveal health and disease-associated microbiome signatures is to disentangle regulatory networks of microbes among themselves and with their host. Using the integrated Drosophila-commensal-pathogen model system, we here reported that Drosophila and commensal bacterium L. plantarum cooperated to compete with the opportunistic pathogen S. marcescens. At first, we found that Drosophila larvae and L. more...

Organism:: Serratia marcescens; Lactiplantibacillus plantarum

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL33401 GPL34033 GPL30015
6 Samples

Download data: MTX, TSV

Series

Accession:: GSE251782

ID:: 200251782

Select item 2002517813.

Drosophila and Commensal Bacteria Synergistically Compete with Opportunistic Pathogens at Bulk and Single-Cell Resolutions [bulkRNA-seq]

Organism:: Lactiplantibacillus plantarum; Serratia marcescens

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL34033 GPL30015 GPL33401
24 Samples

Download data: TXT

Series

Accession:: GSE251781

ID:: 200251781

Select item 2002675314.

The transcriptional response to low temperature is weakly conserved across Enterobacteriales

(Submitter supplied) Bacteria respond to changes in their external environment like temperature by changing the transcription of their genes, but we know little about how these regulatory patterns evolve. We used RNA-seq to study the transcriptional response of a shift from 37°C to 15°C in wild-type Escherichia coli, Salmonella enterica, Citrobacter rodentium, Enterobacter cloacae, Klebsiella pneumoniae, and Serratia marcescens, as well as ∆rpoS strains of E. more...

Organism:: Citrobacter rodentium; Enterobacter cloacae; Escherichia coli; Klebsiella pneumoniae; Salmonella enterica; Serratia marcescens

Type:: Expression profiling by high throughput sequencing

6 related Platforms
64 Samples

Download data: TXT

Series

Accession:: GSE267531

ID:: 200267531

Select item 2002681495.

Transcriptomic analyses of bacterial growth on fungal necromass reveals different microbial community niches during degradation

(Submitter supplied) Bacteria are major drivers of organic matter decomposition and play crucial roles in global nutrient cycling. Although the degradation of dead fungal biomass (necromass) is increasingly recognized as an important contributor to soil carbon (C) and nitrogen (N) cycling, the genes and metabolic pathways involved in necromass degradation are under characterized. In particular, how bacteria degrade necromass containing different quantities of melanin, which largely control rates of necromass decomposition in situ, is largely unknown. more...

Organism:: Cellvibrio japonicus; Chitinophaga pinensis; Serratia marcescens

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL34520 GPL34518 GPL34519
48 Samples

Download data: CSV, XLSX

Series

Accession:: GSE268149

ID:: 200268149

Select item 2002484736.

Auxin-mediated regulation of susceptibility to toxic metabolites, c-di-GMP levels, and phage infection in the rhizobacterium Serratia plymuthica

(Submitter supplied) To investigate the broader effects of exogenous IAA on gene expression in S. plymuthica A153, we used transcriptome sequencing (RNA-seq) to analyze changes in the global transcriptome of A153 in response to IAA treatment.

Organism:: Serratia plymuthica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33949
9 Samples

Download data: CSV

Series

Accession:: GSE248473

ID:: 200248473

PubMed Full text in PMC Similar studies

Select item 2002324847.

The Host Modulates Transcriptional Profile and Phenotypic Heterogeneity in Symbionts

(Submitter supplied) Host-microbe interactions are virtually bidirectional, benefiting both the host and microbial sides. It is becoming increasingly recognized the influence of the microbe on many aspects of host physiology and diseases, but whether/how the host affects their symbionts is poorly characterized. Here, we reported that the host acts as a critical factor to shape the lifestyle of their symbionts in the Drosophila and bacteria model system. more...

Organism:: Serratia marcescens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33401
10 Samples

Download data: TSV

Series

Accession:: GSE232484

ID:: 200232484

PubMed Full text in PMC Similar studies

Select item 2002321208.

The Host Modulates Transcriptional Profile and Phenotypic Heterogeneity in Symbionts.

Organism:: Serratia marcescens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33401
9 Samples

Download data: TXT

Series

Accession:: GSE232120

ID:: 200232120

PubMed Full text in PMC Similar studies

Select item 2002261079.

Effect of deletion of the ipdc gene, involved in indole-3-acetic acid synthesis, in the biocontrol agent Serratia plymuthica A153

(Submitter supplied) To explore the role of indole-3-acetic acid (IAA) as signalling molecule in plant-associated bacteria we analyzed the whole transcriptome of S. plymuthica A153 wild type and its Δipdc mutant in vitro

Organism:: Serratia plymuthica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33188
6 Samples

Download data: TXT

Series

Accession:: GSE226107

ID:: 200226107

PubMed Full text in PMC Similar studies

Select item 20015564810.

Transcriptional impact of eepR mutation in Serratia marcescens

(Submitter supplied) The EepR protein is a two-component response regulator protein in the bacterium Serratia marcescens. Mutation of the eepR gene results in pleiotropic changes including reduced expression of secondary metabolites and proteases.

Organism:: Serratia marcescens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28109
8 Samples

Download data: TXT

Series

Accession:: GSE155648

ID:: 200155648

Select item 20007818511.

Global identification of Hfq-bound RNA and transcriptional start site mapping in Serratia marcescens.

(Submitter supplied) In order to identify mRNA and sRNAs associated with the RNA-binding protein Hfq in Serratia marcescens strain Db10, Hfq-bound RNA was immunoprecipitated from a strain encoding an Hfq-3FLAG fusion protein at the normal location and sequenced, in parallel with the wild type strain (no fusion) as negative control. Additionally global transcriptional start site mapping was performed on total RNA, with or without TEX treatment, isolated from wild type Serratia marcescens. more...

Organism:: Serratia marcescens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL21500
4 Samples

Download data: WIG

Series

Accession:: GSE78185

ID:: 200078185

SRA Run Selector

Select item 20016965112.

A genome-scale antibiotic screen in Serratia marcescens identifies YdgH as a conserved modifier of cephalosporin and detergent susceptibility

(Submitter supplied) Serratia marcescens, a member of the order Enterobacterales, is adept at colonizing healthcare environments and an important cause of invasive infections. Antibiotic resistance is a daunting problem in S. marcescens because in addition to plasmid-mediated mechanisms, most isolates have considerable intrinsic resistance to multiple antibiotic classes. To discover endogenous modifiers of antibiotic susceptibility in S. more...

Organism:: Serratia marcescens subsp. marcescens ATCC 13880

Type:: Other

Platform:: GPL29934
5 Samples

Download data: XLSX

Series

Accession:: GSE169651

ID:: 200169651

SRA Run Selector

Select item 20015548613.

Virulence factor expression by Serratia marcescens during microbial keratitis is regulated by stress response protein GumB

(Submitter supplied) The goal of this project was to analyze virulence factor expression during microbial keratitis and to determine the impact of the Rcs system regulator GumB on the transcriptional profile

Organism:: Oryctolagus cuniculus; Serratia marcescens

Type:: Other

Platform:: GPL28651
12 Samples

Download data: RCC

Series

Accession:: GSE155486

ID:: 200155486

Analyze with GEO2R

Select item 20015211514.

Serratia marcescens gene expression mediated by EepR, Rcs system, and GntR-family regulator

(Submitter supplied) The goal of this project was to analyze the role of three different transcriptional regulator systems in regulation of gene expression

Organism:: Serratia marcescens

Type:: Other

Platform:: GPL28651
24 Samples

Download data: RCC, TXT

Series

Accession:: GSE152115

ID:: 200152115

Analyze with GEO2R

Select item 20015103115.

Transcriptional impact of gumB mutation in Serratia marcescens

(Submitter supplied) The GumB protein is an IgaA-family member that negatively regulates the Rcs stress response system in the bacterium Serratia marcescens. Mutation of the gumB gene results in increased RCs system activity of numerous genes including those involved in flagellar based motility and capsular polysaccharide formation.

Organism:: Serratia marcescens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28573
6 Samples

Download data: TXT

Series

Accession:: GSE151031

ID:: 200151031

SRA Run Selector

Select item 20014464616.

Insight into the regulation of prodigiosin production by temperature in Serratia marcescens through transcriptome analysis

(Submitter supplied) We report the application of transcriptome sequencing technology for high-throughput profiling of Serratia marcescens for producing prodigiosin. By obtaining over 163 million bases of sequence from Serratia marcescens genome DNA, we generated transcriptome -state maps of Serratia marcescens 12h cells, 24h cells, and 36h cells at 30C and 37C,respectively. We explored the mechanism of S. marcescens response temperature regulation at the transcription level through transcriptome sequencing technology. more...

Organism:: Serratia marcescens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28109
12 Samples

Download data: TXT

Series

Accession:: GSE144646

ID:: 200144646

SRA Run Selector

Select item 20015882917.

Transcriptome analysis of gene expression of strains JNB5-1 and SK8-37

(Submitter supplied) RNAseq analysis was performed to evaluate gene expression differences between strains JNB5-1 and SK8-37. S. marcescens JNB5-1 and SK8-37 cells were grown in LB medium for 10 h before harvesting. The collected cells were then treated with RNAprep pure Kit (TIANGEN) to extract total bacterial RNA and delivered to GENEWIZ in dry ice for transcriptome resequencing analysis. For annotation, the genome of S. more...

Organism:: Serratia marcescens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26806
2 Samples

Download data: XLSX

Series

Accession:: GSE158829

ID:: 200158829

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20014558718.

The Serratia marcescens siderophore, serratiochelin, is necessary for full virulence during bloodstream infection

(Submitter supplied) Serratia marcescens is a bacterium frequently found in the environment, but over the last several decades it has evolved into a concerning clinical pathogen, causing fatal bacteremia. To establish such infections, pathogens require specific nutrients; one very limited but essential nutrient is iron. We sought to characterize the iron acquisition systems in S. marcescens isolate UMH9, which was recovered from a clinical bloodstream infection. more...

Organism:: Serratia marcescens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28109
4 Samples

Download data: XLSX

Series

Accession:: GSE145587

ID:: 200145587

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20014940019.

Transcriptome analysis of gene expression of strains JNB5-1 and SK68

(Submitter supplied) RNAseq analysis was performed to evaluate gene expression differences between strains JNB5-1 and SK68. S. marcescens JNB5-1 and SK68 cells were grown in LB medium for 4 h before harvesting. The collected cells were then treated with RNAprep pure Kit (TIANGEN) to extract total bacterial RNA and delivered to GENEWIZ in dry ice for transcriptome resequencing analysis. For annotation, the genome of S. marcescens WW4 (NC_020211.1) was used as reference. more...

Organism:: Serratia marcescens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26806
2 Samples

Download data: TXT

Series

Accession:: GSE149400

ID:: 200149400

SRA Run Selector

Select item 20013718520.

An XRE-superfamily transcriptional regulator XrpA controls low pH tolerance of Serratia marcescens

(Submitter supplied) The acid tolerance of industrial strains is a significant challenge in the fermentation process. The bacterium Serratia marcescens is part of the Enterobacteriaceae family of eubacteria, which is a potential industrial microorganism. However, the molecular mechanism behind S. marcescens acid resistance is not properly understood. In this study, we screened for novel regulators that respond to acidic conditions by a Tn5G transposon insertion mutagenesis of S. more...

Organism:: Serratia marcescens WW4

Type:: Expression profiling by high throughput sequencing

Platform:: GPL27450
2 Samples

Download data: TXT

Series

Accession:: GSE137185

ID:: 200137185

SRA Run Selector

<< First< Prev

Page of 12

Next >Last >>

GEO DataSets

Functional Genomics Studies

Result Filters

Entry type

Organism

Study type

Author

Attribute name

Publication dates

Custom date range

Additional filters

Send to:

Search results

Items: 1 to 20 of 229

Send to:

Supplemental Content

Find related data

Search details

Important Links

Recent activity