U.S. flag

An official website of the United States government

Format
Items per page
Sort by

Send to:

Choose Destination

Search results

Items: 20

1.

WGS data to conduct phylogenetic analysis in Trichinella

(Submitter supplied) To reveal the correlation between epigenomic diversity and genomic SNVs, we first identified SNPs between T4 with other eleven Trichinella species. In total, we obtained 5,395,250 common SNVs across the twelve Trichinella species.
Organism:
Trichinella nelsoni; Trichinella pseudospiralis; Trichinella murrelli; Trichinella britovi; Trichinella papuae; Trichinella zimbabwensis; Trichinella patagoniensis; Trichinella spiralis; Trichinella nativa; Trichinella sp. T6; Trichinella sp. T8; Trichinella sp. T9
Type:
Other
12 related Platforms
12 Samples
Download data: TXT
Series
Accession:
GSE169404
ID:
200169404
2.

Three life stages

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Trichinella papuae; Trichinella zimbabwensis; Trichinella britovi; Trichinella sp. T9; Trichinella spiralis; Trichinella nativa; Trichinella sp. T8; Trichinella nelsoni; Trichinella pseudospiralis; Trichinella sp. T6; Trichinella murrelli; Trichinella patagoniensis
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other
24 related Platforms
84 Samples
Download data: TXT
Series
Accession:
GSE140384
ID:
200140384
3.

12 transcriptomes of three life stages using RNA-Seq

(Submitter supplied) As DNA methylation can modulate gene expression, we then focused our analysis on changes of methylation at the host taxonomic level, that is between encapsulated and non-encapsulated clade, and within non-encapsulated clade, to reveal epigenetic regulation on transcriptomes from Ad and ML stages. By comparing DNA methylation patterns between different host classes of species, we found a fraction of parasitism-related genes under epigenetic regulation, such as G-protein-coupled receptor, DNaseII and ligand-gated chloride channel.
Organism:
Trichinella britovi; Trichinella murrelli; Trichinella papuae; Trichinella zimbabwensis; Trichinella patagoniensis; Trichinella sp. T8; Trichinella sp. T9; Trichinella sp. T6; Trichinella spiralis; Trichinella nativa; Trichinella nelsoni; Trichinella pseudospiralis
Type:
Expression profiling by high throughput sequencing
12 related Platforms
36 Samples
Download data: TXT
Series
Accession:
GSE140382
ID:
200140382
4.

12 single-base resolution methylomes of three life stages using WGBS

(Submitter supplied) As the most studied type of epigenetic modifications found in many taxa, DNA methylation has been confirmed to play a crucial role in transposon silencing, transcriptional regulation and thus phenotypic variation, as well as rapid adaption to changing environments. To fully understand the methylome variation in Trichinella, here, we report 12 single-base resolution methylomes of three life stages using WGBS. more...
Organism:
Trichinella sp. T6; Trichinella spiralis; Trichinella nativa; Trichinella zimbabwensis; Trichinella nelsoni; Trichinella pseudospiralis; Trichinella britovi; Trichinella murrelli; Trichinella patagoniensis; Trichinella sp. T8; Trichinella sp. T9; Trichinella papuae
Type:
Methylation profiling by high throughput sequencing
12 related Platforms
36 Samples
Download data: TXT
Series
Accession:
GSE139486
ID:
200139486
5.

Comparative multi-omic analyses of Trichinella Pseudospiralis based on a new genome assembly by long-read sequencing

(Submitter supplied) Genome assemblies can form the basis of comparative analyses fostering insight into the evolutionary genetics. Genome evolution influences a parasite’s pathogenicity, host–pathogen interactions, environmental constraints and invasion biology. Comparative genomics and epigenomics analyses will provide deep understanding of parasitism biology for future diagnosis and prevention of trchinellosis. We provide a near-complete new T.p reference genome using SMRT technology, first time confirmed and characterized T.p DNA methylome, enabling full annotation. more...
Organism:
Trichinella pseudospiralis
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platform:
GPL24891
6 Samples
Download data: FA, GFF, TXT
Series
Accession:
GSE113105
ID:
200113105
6.

Illumina HiSeq 2000 (Trichinella pseudospiralis)

Organism:
Trichinella pseudospiralis
2 Series
1 Sample
Download data
Platform
Accession:
GPL29901
ID:
100029901
7.

Illumina HiSeq 2500 (Trichinella pseudospiralis)

Organism:
Trichinella pseudospiralis
4 Series
12 Samples
Download data
Platform
Accession:
GPL24891
ID:
100024891
8.

T4.RNA-seq.NBL

Organism:
Trichinella pseudospiralis
Source name:
T. pseudospiralis
Platform:
GPL24891
Series:
GSE140382 GSE140384
Download data: TXT
Sample
Accession:
GSM4160370
ID:
304160370
9.

T4.RNA-seq.ML

Organism:
Trichinella pseudospiralis
Source name:
T. pseudospiralis
Platform:
GPL24891
Series:
GSE140382 GSE140384
Download data: TXT
Sample
Accession:
GSM4160369
ID:
304160369
10.

T4.RNA-seq.AD

Organism:
Trichinella pseudospiralis
Source name:
T. pseudospiralis
Platform:
GPL24891
Series:
GSE140382 GSE140384
Download data: TXT
Sample
Accession:
GSM4160368
ID:
304160368
11.

T4.WGBS.NBL

Organism:
Trichinella pseudospiralis
Source name:
T. pseudospiralis
Platform:
GPL24891
Series:
GSE139486 GSE140384
Download data: TXT
Sample
Accession:
GSM4142196
ID:
304142196
12.

T4.WGBS.ML

Organism:
Trichinella pseudospiralis
Source name:
T. pseudospiralis
Platform:
GPL24891
Series:
GSE139486 GSE140384
Download data: TXT
Sample
Accession:
GSM4142195
ID:
304142195
13.

T4.WGBS.AD

Organism:
Trichinella pseudospiralis
Source name:
T. pseudospiralis
Platform:
GPL24891
Series:
GSE139486 GSE140384
Download data: TXT
Sample
Accession:
GSM4142194
ID:
304142194
14.

T4.WGS

Organism:
Trichinella pseudospiralis
Source name:
T. pseudospiralis
Platform:
GPL29901
Series:
GSE140384 GSE169404
Download data
Sample
Accession:
GSM5201990
ID:
305201990
15.

NBL_RNA-seq

Organism:
Trichinella pseudospiralis
Source name:
body
Platform:
GPL24891
Series:
GSE113105
Download data: TXT
Sample
Accession:
GSM3096997
ID:
303096997
16.

ML_RNA-seq

Organism:
Trichinella pseudospiralis
Source name:
body
Platform:
GPL24891
Series:
GSE113105
Download data: TXT
Sample
Accession:
GSM3096996
ID:
303096996
17.

Ad_RNA-seq

Organism:
Trichinella pseudospiralis
Source name:
body
Platform:
GPL24891
Series:
GSE113105
Download data: TXT
Sample
Accession:
GSM3096995
ID:
303096995
18.

NBL_WGBS

Organism:
Trichinella pseudospiralis
Source name:
body
Platform:
GPL24891
Series:
GSE113105
Download data: TXT
Sample
Accession:
GSM3096994
ID:
303096994
19.

ML_WGBS

Organism:
Trichinella pseudospiralis
Source name:
body
Platform:
GPL24891
Series:
GSE113105
Download data: TXT
Sample
Accession:
GSM3096993
ID:
303096993
20.

Ad_WGBS

Organism:
Trichinella pseudospiralis
Source name:
body
Platform:
GPL24891
Series:
GSE113105
Download data: TXT
Sample
Accession:
GSM3096992
ID:
303096992
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

db=gds|term=txid6337[Organism]|query=1|qty=13|blobid=MCID_672f7200b084802e75361b1f|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center