GEO DataSets

(Submitter supplied) Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare the gene (including sRNA) expression of the Wild Type Vibrio harveyi 345 and hfq mutant 345∆hfq, thus to figure out the effect of hfq on the gene expression of V. harveyi Methods:The mid-log bacterial cells (OD600 = 3.5) of wild type strain V. harveyi 345 and the hfq mutant strain 345∆hfq were collected to extract the total RNA. more...

Organism:

Vibrio harveyi

Type:

Expression profiling by high throughput sequencing

Platform:

GPL31293

2 Samples

Download data: TXT

(Submitter supplied) Vibrio species represent one of the most diverse genera of marine bacteria known for their ubiquitous presence in natural aquatic systems. Several members of this genus including Vibrio harveyi are receiving increasing attention lately because they are becoming a source of health problems, especially for some marine organisms widely used in sea food industry. To learn about adaptation changes triggered by V. more...

Organism:

Vibrio harveyi

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24925

12 Samples

Download data: GTF, TXT

(Submitter supplied) Objectives: determination of transcription start sites in Vibrio harveyi genome and discovery of new transcripts Methods: we performed differential seqencing of total RNA isolated from o.n. control Vibrio harveyi cultures. Sample treatment with Terminator EXonuclease (TEX) allowed differenciation of primary and secondary transcripts, helping in the definition of transcription start sites (TSS) Results: by data-mining RNA-seq data and performing some Northern Blot experiments we were able to detect new putative small-RNAs, along with these results, a more deep analisys of our RNA-seq data will give futher insight into genetic organization of Vibrio harveyi genome to help in its investigation

Organism:

Vibrio harveyi NBRC 15634 = ATCC 14126 = KCTC 12724

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24130

6 Samples

Download data: GFF, GTF, TXT

(Submitter supplied) LuxR is the master quorum sensing regulator in Vibrio harveyi. This transcription factor controls the expression of over 600 genes to coordinate group behaviors. In order to understand how LuxR regulates transcription we identified a co-regulator, integration host factor (IHF). In this study we performed RNA-seq to show that the LuxR and IHF regulons overlap significantly.

Organism:

Vibrio harveyi

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22744

9 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Vibrio harveyi

Type:

Expression profiling by array

Platform:

GPL16606

44 Samples

Download data: TXT

(Submitter supplied) Microarray data for study "The master regulators AphA and LuxR control the Vibrio harveyi quorum-sensing regulon: analysis of their individual and combined effects". Bacteria use a chemical communication process called quorum sensing to control transitions between individual and group behaviors. In the Vibrio harveyi quorum-sensing circuit, two master transcription factors AphA and LuxR coordinate the quorum-sensing response. more...

Organism:

Vibrio harveyi

Type:

Expression profiling by array

Platform:

GPL16606

8 Samples

Download data: TXT

(Submitter supplied) Microarray data for study "The master regulators AphA and LuxR control the Vibrio harveyi quorum-sensing regulon: analysis of their individual and combined effects". Bacteria use a chemical communication process called quorum sensing to control transitions between individual and group behaviors. In the Vibrio harveyi quorum-sensing circuit, two master transcription factors AphA and LuxR coordinate the quorum-sensing response. more...

Organism:

Vibrio harveyi

Type:

Expression profiling by array

Platform:

GPL16606

4 Samples

Download data: TXT

(Submitter supplied) Microarray data for study "The master regulators AphA and LuxR control the Vibrio harveyi quorum-sensing regulon: analysis of their individual and combined effects". Bacteria use a chemical communication process called quorum sensing to control transitions between individual and group behaviors. In the Vibrio harveyi quorum-sensing circuit, two master transcription factors AphA and LuxR coordinate the quorum-sensing response. more...

Organism:

Vibrio harveyi

Type:

Expression profiling by array

Platform:

GPL16606

4 Samples

Download data: TXT

(Submitter supplied) Microarray data for study "The master regulators AphA and LuxR control the Vibrio harveyi quorum-sensing regulon: analysis of their individual and combined effects". Bacteria use a chemical communication process called quorum sensing to control transitions between individual and group behaviors. In the Vibrio harveyi quorum-sensing circuit, two master transcription factors AphA and LuxR coordinate the quorum-sensing response. more...

Organism:

Vibrio harveyi

Type:

Expression profiling by array

Platform:

GPL16606

4 Samples

Download data: TXT

(Submitter supplied) Microarray data for study "The master regulators AphA and LuxR control the Vibrio harveyi quorum-sensing regulon: analysis of their individual and combined effects". Bacteria use a chemical communication process called quorum sensing to control transitions between individual and group behaviors. In the Vibrio harveyi quorum-sensing circuit, two master transcription factors AphA and LuxR coordinate the quorum-sensing response. more...

Organism:

Vibrio harveyi

Type:

Expression profiling by array

Platform:

GPL16606

4 Samples

Download data: TXT

(Submitter supplied) Microarray data for study "The master regulators AphA and LuxR control the Vibrio harveyi quorum-sensing regulon: analysis of their individual and combined effects". Bacteria use a chemical communication process called quorum sensing to control transitions between individual and group behaviors. In the Vibrio harveyi quorum-sensing circuit, two master transcription factors AphA and LuxR coordinate the quorum-sensing response. more...

Organism:

Vibrio harveyi

Type:

Expression profiling by array

Platform:

GPL16606

8 Samples

Download data: TXT

(Submitter supplied) Microarray data for study "The master regulators AphA and LuxR control the Vibrio harveyi quorum-sensing regulon: analysis of their individual and combined effects". Bacteria use a chemical communication process called quorum sensing to control transitions between individual and group behaviors. In the Vibrio harveyi quorum-sensing circuit, two master transcription factors AphA and LuxR coordinate the quorum-sensing response. more...

Organism:

Vibrio harveyi

Type:

Expression profiling by array

Platform:

GPL16606

8 Samples

Download data: TXT

(Submitter supplied) Microarray data for study "The master regulators AphA and LuxR control the Vibrio harveyi quorum-sensing regulon: analysis of their individual and combined effects". Bacteria use a chemical communication process called quorum sensing to control transitions between individual and group behaviors. In the Vibrio harveyi quorum-sensing circuit, two master transcription factors AphA and LuxR coordinate the quorum-sensing response. more...

Organism:

Vibrio harveyi

Type:

Expression profiling by array

Platform:

GPL16606

4 Samples

Download data: TXT

(Submitter supplied) Design ID: Agilent-037644; Vharveyi_2011 Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

Vibrio harveyi

9 Series

44 Samples

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