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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_042267.1 RefSeqGene
- Range
-
5011..32481
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001305005.3 → NP_001291934.1 high affinity choline transporter 1 isoform a
See identical proteins and their annotated locations for NP_001291934.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same isoform (a).
- Source sequence(s)
-
AC009963, AK315280, DA714970
- Consensus CDS
-
CCDS2074.1
- UniProtKB/Swiss-Prot
- Q53TF2, Q9GZV3
- UniProtKB/TrEMBL
-
B2RCU2
- Related
- ENSP00000387346.1, ENST00000409059.5
- Conserved Domains (1) summary
-
- cd11474
Location:8 → 495
- SLC5sbd_CHT; Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain
-
NM_001305006.3 → NP_001291935.1 high affinity choline transporter 1 isoform b
See identical proteins and their annotated locations for NP_001291935.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate exon in the 5' end compared to variant 1. This difference causes translation initiation at a downstream AUG and results in an isoform (b) with a shorter N-terminus compared to isoform a.
- Source sequence(s)
-
AC009963, AK300801
- UniProtKB/TrEMBL
-
B4DUU7
- Conserved Domains (1) summary
-
- cd11474
Location:1 → 390
- SLC5sbd_CHT; Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain
-
NM_001305007.3 → NP_001291936.1 high affinity choline transporter 1 isoform c
See identical proteins and their annotated locations for NP_001291936.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate internal splice junction compared to variant 1. This difference causes translation initiation at a downstream AUG and results in an isoform (c) with a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AC009963, BC111524, DA714970
- UniProtKB/TrEMBL
-
Q2T9H3
- Conserved Domains (1) summary
-
- cd11474
Location:1 → 248
- SLC5sbd_CHT; Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain
-
NM_021815.5 → NP_068587.1 high affinity choline transporter 1 isoform a
See identical proteins and their annotated locations for NP_068587.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). Variants 1 and 2 both encode the same isoform (a).
- Source sequence(s)
-
AC009963, BC111525, DA714970
- Consensus CDS
-
CCDS2074.1
- UniProtKB/Swiss-Prot
- Q53TF2, Q9GZV3
- UniProtKB/TrEMBL
-
B2RCU2
- Related
- ENSP00000264047.2, ENST00000264047.3
- Conserved Domains (1) summary
-
- cd11474
Location:8 → 495
- SLC5sbd_CHT; Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain