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    LOC100879616 uncharacterized LOC100879616 [ Megachile rotundata (alfalfa leafcutting bee) ]

    Gene ID: 100879616, updated on 1-Oct-2024

    Summary

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    Gene symbol
    LOC100879616
    Gene description
    uncharacterized LOC100879616
    See related
    EnsemblRapid:LOC100879616
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Megachile rotundata
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Megachile
    Orthologs
    honey bee all
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    Genomic context

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    See LOC100879616 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current MROT_1.0 (GCF_000220905.1) Unplaced Scaffold NW_003803312.1 (3454..8181, complement)

    NW_003803312.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003803312.1 Unplaced Scaffold Reference MROT_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genes involved in convergent evolution of eusociality in bees. Woodard SH, et al. Proc Natl Acad Sci U S A, 2011 May 3. PMID 21482769, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100879616

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Megachile rotundata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MROT_1.0

    Genomic

    1. NW_003803312.1 Reference MROT_1.0

      Range
      3454..8181 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003708631.2 → XP_003708679.1  uncharacterized protein LOC100879616 isoform X2

      Related
      XP_003708679.1, XM_003708631.2
      Conserved Domains (2) summary
      smart00225
      Location:34 → 124
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:23 → 117
      BTB; BTB/POZ domain

    2. XM_012298213.1 → XP_012153603.1  uncharacterized protein LOC100879616 isoform X3

      Related
      XP_012153603.1, XM_012298213.1
      Conserved Domains (2) summary
      smart00225
      Location:34 → 147
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:23 → 140
      BTB; BTB/POZ domain

    3. XM_012298212.1 → XP_012153602.1  uncharacterized protein LOC100879616 isoform X1

      Related
      XP_012153602.1, XM_012298212.1
      Conserved Domains (2) summary
      smart00225
      Location:34 → 147
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:23 → 140
      BTB; BTB/POZ domain

    4. XM_012298214.1 → XP_012153604.1  uncharacterized protein LOC100879616 isoform X4

      Related
      XP_012153604.1, XM_012298214.1
      Conserved Domains (1) summary
      cl02518
      Location:16 → 74
      BTB; BTB/POZ domain

    5. XM_012298215.1 → XP_012153605.1  uncharacterized protein LOC100879616 isoform X5

      Related
      XP_012153605.1, XM_012298215.1
      Conserved Domains (2) summary
      smart00225
      Location:34 → 147
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:23 → 140
      BTB; BTB/POZ domain

    6. XM_012298217.1 → XP_012153607.1  uncharacterized protein LOC100879616 isoform X6

      See identical proteins and their annotated locations for XP_012153607.1

      Related
      XP_012153607.1, XM_012298217.1
      Conserved Domains (2) summary
      smart00225
      Location:34 → 147
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:23 → 140
      BTB; BTB/POZ domain

    7. XM_012298216.1 → XP_012153606.1  uncharacterized protein LOC100879616 isoform X6

      See identical proteins and their annotated locations for XP_012153606.1

      Related
      XP_012153606.1, XM_012298216.1
      Conserved Domains (2) summary
      smart00225
      Location:34 → 147
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:23 → 140
      BTB; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version

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