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20 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Xenopus tropicalis		BED
GSE14025	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	4	BED TXT SRA Run Selector	Gert Jan Veenstra	Sep 15, 2009
GSE19413	ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation	Genome binding/occupancy profiling by genome tiling array	Xenopus tropicalis	10	BED BEDGRAPH PAIR TXT ZIP	Gert Jan Veenstra	Dec 17, 2009
GSE21482	Nucleotide composition-linked divergence of vertebrate core promoter architecture	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	3	BED TXT SRA Run Selector	Gert Jan Veenstra	Dec 30, 2010
GSE23913	Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis	Methylation profiling by high throughput sequencing	Xenopus tropicalis	4	BED SRA Run Selector	Ozren Bogdanovic	Jun 23, 2011
GSE30146	HEB and E2A function as SMAD/FOXH1 cofactors	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	2	BED TXT SRA Run Selector	Se-Jin Yoon	Aug 23, 2011
GSE38605	Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Xenopus tropicalis	8	BED SRA Run Selector	Caroline Hill	Sep 23, 2013
GSE41161	Principles of nucleation of H3K27 methylation during embryonic development	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	16	BED WIG SRA Run Selector	Gert Jan Veenstra	Nov 28, 2013
GSE43512	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Methylation profiling by high throughput sequencing	Anolis carolinensis Danio rerio Gallus gallus Homo sapiens Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	24	BED SRA Run Selector	David Sims	Jan 22, 2013
GSE67974	Embryonic transcription is controlled by maternally defined chromatin state	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	72	BED BW TXT SRA Run Selector	Saartje Hontelez	Dec 15, 2015
GSE68087	Active DNA demethylation at enhancers during the vertebrate phylotypic period	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Mus musculus Xenopus tropicalis	30	BED TXT SRA Run Selector	Ozren Bogdanovic	Jan 29, 2016
GSE85273	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Xenopus tropicalis	11	BED BEDGRAPH SRA Run Selector	Rebekah M Charney	Mar 30, 2017
GSE92382	Regulatory remodeling in the allo-tetraploid frog Xenopus laevis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Xenopus tropicalis Xenopus tropicalis x Xenopus laevis	22	BED TXT SRA Run Selector	Simon van Heeringen	Sep 28, 2017
GSE113186	Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Xenopus tropicalis	202	BED BEDGRAPH BW TXT SRA Run Selector	George E. Gentsch	Apr 16, 2019
GSE118024	Endodermal maternal transcription factors establish super enhancers during zygotic genome activation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	39	BED TXT SRA Run Selector	Kitt D. Paraiso	Jun 04, 2019
GSE139267	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain	Methylation profiling by high throughput sequencing	Xenopus tropicalis	15	BED SRA Run Selector	Robert J Denver	Oct 23, 2019
GSE145619	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	132	BED TAB TBI TSV SRA Run Selector	Ann Rose Bright	Dec 18, 2020
GSE146830	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	31	BED TXT SRA Run Selector	Anneke Dixie Kakebeen	Mar 12, 2020
GSE148726	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	54	BED XLSX SRA Run Selector	Kitt D. Paraiso	Sep 16, 2020
GSE175662	Chromatin Accessibility Analysis Reveals Distinct Functions for HDAC and EZH2 Activities in Early Regeneration	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	35	BED TXT SRA Run Selector	Anneke Dixie Kakebeen	May 01, 2022
GSE199671	Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	11	BED TAB	Jessen V Bredeson	Mar 30, 2022