GEO Browser - GEO

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38 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus		BED
GSE27945	Genome-wide CTCF binding maps in chicken red blood cells	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	2	BED MAP	David Martin	Apr 15, 2011
GSE33541	Marek's Disease Virus Infection Induces Differential Chromatin Marks and Tissue-specific effects in inbred chicken lines	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	8	BED PROBSCOREISLAND TXT SRA Run Selector	Apratim Mitra	Jan 01, 2013
GSE38066	Epigenomic profiling of enhancers identifies orphan nuclear receptors NR2F1 and NR2F2 as novel regulators of human neural crest.	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	4	BED SRA Run Selector	Alvaro Rada	Sep 13, 2012
GSE44588	An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	7	BED SRA Run Selector	Christian Roy	Mar 26, 2013
GSE44690	An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Gallus gallus Mus musculus	56	BED	Christian Roy	Mar 26, 2013
GSE44799	Distinct Global Shifts in Genomic Binding Profiles of Limb Malformation Associated HOXD13 Mutations	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Gallus gallus	13	BED TXT SRA Run Selector	Peter Hansen	Aug 19, 2013
GSE51846	Clustering of CpG islands constitutes an important determinant of the interphase chromosome 3D organization [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	4	BED SRA Run Selector	Artem V Artemov	Mar 01, 2014
GSE51939	Clustering of CpG islands constitutes an important determinant of the interphase chromosome 3D organization	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus	10	BED BEDGRAPH	Artem V Artemov	Mar 01, 2014
GSE86088	Genome-wide binding of posterior HOXA/D transcription factors reveals subgrouping and association with CTCF [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	40	BED BW SRA Run Selector	Daniel Murad Ibrahim	Dec 31, 2016
GSE115561	Similarities and differences in the regulation of HoxD genes during chick and mouse limb development [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	33	BED BEDGRAPH SRA Run Selector	Nayuta Yakushiji-Kaminatsui	Nov 27, 2018
GSE115563	Similarities and differences in the regulation of HoxD genes during chick and mouse limb development.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	64	BED BEDGRAPH TXT	Nayuta Yakushiji-Kaminatsui	Nov 27, 2018
GSE117595	Mapping of low-salt soluble chromatin identifies known and novel transcriptionally active genes in chicken erythrocytes	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	1	BED TXT SRA Run Selector	James Ronald Davie	Jul 24, 2019
GSE121318	Reconstruction of the global neural crest gene regulatory network in vivo [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	17	BED TXT SRA Run Selector	Tatjana Sauka-Spengler	Oct 09, 2019
GSE121527	Reconstruction of the global neural crest gene regulatory network in vivo	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Gallus gallus	213	BED MTX TSV TXT	Tatjana Sauka-Spengler	Oct 09, 2019
GSE128818	Aberrant phase separation of transcription factors in human developmental disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Gallus gallus Mus musculus	19	BED BW MTX TSV SRA Run Selector	Denes Hnisz	May 07, 2020
GSE131688	Reconstruction of the global neural crest gene regulatory network in vivo [single cell]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	2	BED MTX TSV SRA Run Selector	Tatjana Sauka-Spengler	Oct 09, 2019
GSE136775	Attenuated FGF signaling underlies the forelimb heterochrony in the emu Dromaius novaehollandiae (ATAC-seq data)	Genome binding/occupancy profiling by high throughput sequencing	Dromaius novaehollandiae Gallus gallus	18	BED BEDGRAPH CSV TXT SRA Run Selector	John Young	Sep 30, 2019
GSE136776	Attenuated FGF signaling underlies the forelimb heterochrony in the emu Dromaius novaehollandiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Dromaius novaehollandiae Gallus gallus	58	BED BEDGRAPH	John Young	Sep 30, 2019
GSE137302	Identification of Key HIF-1α Target Genes that Regulate Adaptation to Hypoxic Conditions in Tibetan Chicken Embryos	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	4	BED SRA Run Selector	Ying Zhang	Sep 12, 2019
GSE137664	Enhancer activation by FGF signalling during otic induction	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	6	BED SRA Run Selector	Andrea Streit	Sep 19, 2019