GEO Browser - GEO

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23 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Plasmodium falciparum		BEDGRAPH
GSE197916	Metabolic competition between lipid metabolism and histone methylation regulates sexual differentiation in human malaria parasites	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	30	BED BEDGRAPH	Bjorn FC Kafsack	Jul 01, 2023
GSE208560	Patterns of heterochromatin distribution alterations linked to transcriptional changes at Plasmodium falciparum clonally variant gene loci [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	25	BEDGRAPH NARROWPEAK	Lucas Michel-Todó	Nov 03, 2022
GSE208561	Patterns of heterochromatin distribution alterations linked to transcriptional changes at Plasmodium falciparum clonally variant gene loci	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	43	BEDGRAPH NARROWPEAK TXT	Lucas Michel-Todó	Nov 03, 2022
GSE189151	Transcriptional regulator HDP1 regulates expansion of the inner membrane complex during early sexual differentiation of malaria parasites [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	4	BEDGRAPH NARROWPEAK	Bjorn FC Kafsack	Nov 21, 2021
GSE108716	Genome-wide mapping of RNAPII and its phosphoisoforms in Plasmodium falciparum	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	30	BED BEDGRAPH BW NARROWPEAK TXT XLS SRA Run Selector	Mark Stephen Featherstone	Dec 30, 2020
GSE135002	Conditional expression of PfAP2-G for controlled massive sexual conversion in Plasmodium falciparum. [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	8	BED BEDGRAPH FASTA SRA Run Selector	Oriol Llorà-Batlle	Jun 10, 2020
GSE129397	Exploring the var gene interactome with CRISPR/dCas9	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Plasmodium falciparum	5	BEDGRAPH SRA Run Selector	Sebastian Baumgarten	May 01, 2020
GSE145378	An exon DNA element modulates heterochromatin spreading in the master regulator for sexual commitment in malaria parasites	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	20	BEDGRAPH BIGWIG SRA Run Selector	Carlos Cordon-Obras	Feb 18, 2020
GSE133653	TRIBE uncovers the role of Dis3 in shaping the dynamic transcriptome in malaria parasites [TRIBE]	Other	Plasmodium falciparum	10	BEDGRAPH SRA Run Selector	meng liu	Oct 17, 2019
GSE133654	TRIBE uncovers the role of Dis3 in shaping the dynamic transcriptome in malaria parasites	Expression profiling by high throughput sequencing Other	Plasmodium falciparum	43	BEDGRAPH	meng liu	Oct 17, 2019
GSE138499	Epigenetic reader complexes of the human malaria parasite, Plasmodium falciparum	Expression profiling by high throughput sequencing	Plasmodium falciparum	8	BEDGRAPH TXT SRA Run Selector	Christa Toenhake	Oct 15, 2019
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq	Other	Arabidopsis thaliana Caenorhabditis elegans Cereibacter sphaeroides Danio rerio Drosophila melanogaster Escherichia coli Homo sapiens Leishmania major Mus musculus Plasmodium falciparum Saccharomyces cerevisiae Trypanosoma brucei	24	BED BEDGRAPH SRA Run Selector	Giovanni Marsico	Aug 01, 2018
GSE109599	Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	17	BED BEDGRAPH TXT SRA Run Selector	Jose Luis Ruiz Rodriguez	Jul 06, 2018
GSE94901	GDV1 triggers sexual conversion and differentiation in malaria parasites by antagonizing HP1-dependent gene silencing	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Plasmodium falciparum	14	BEDGRAPH SRA Run Selector	Sabine Fraschka	May 04, 2018
GSE104075	Chromatin accessibility based characterization of gene regulatory network of P. falciparum blood stage development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	26	BED BEDGRAPH SRA Run Selector	Christa Toenhake	Apr 11, 2018
GSE102695	Comparative profiling of the heterochromatin landscape in different life cycle stages, strains and species of malaria parasites	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium berghei Plasmodium chabaudi Plasmodium falciparum Plasmodium knowlesi Plasmodium vivax Plasmodium yoelii	26	BEDGRAPH SRA Run Selector	Sabine Fraschka	Jan 16, 2018
GSE80293	PfAP2-I-GFP anti-GFP and anti-IgG ChIP-seq	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	9	BEDGRAPH SRA Run Selector	Manuel Llinas	Jun 01, 2017
GSE80466	Histone variant H3.3 demarcates GC-rich coding and subtelomeric sequences and serves as a potential memory mark for virulence gene expression in P. falciparum	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	12	BEDGRAPH SRA Run Selector	Sabine Fraschka	Feb 10, 2017
GSE76537	Discovery of Telomere Repeat-binding Zinc finger protein in the malaria parasite Plasmodium falciparum	Genome binding/occupancy profiling by high throughput sequencing	Plasmodium falciparum	4	BEDGRAPH TXT SRA Run Selector	Christa Toenhake	Jul 15, 2016
GSE75795	Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes: molecular insight into sex-specific processes and translational repression	Expression profiling by high throughput sequencing	Plasmodium falciparum	3	BEDGRAPH TSV SRA Run Selector	Richard Csaba Bartfai	Jun 28, 2016