GEO Browser - GEO

Series

Samples

Platforms

DataSets

31 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Mus musculus		MTX
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE262845	Antitumor progenitor exhausted CD8 T cells are sustained with TCR engagement	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	46	BW MTX TSV TXT	Tian Mi	Apr 05, 2024
GSE212007	CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	36	BW MTX TSV	Lucia Daxinger	Feb 09, 2024
GSE197501	Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	52	CSV MTX RDS TSV TXT XLSX	Alex Chialastri	Aug 07, 2023
GSE231406	IRF8 configures enhancer landscape in postnatal microglia and directs microglia specific transcriptional programs	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	72	COV MTX TAB TSV TXT	Keita Saeki	Jun 01, 2023
GSE188834	Establish a rapid and efficient chemical reprogramming platform	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	165	MTX TSV TXT	Yunkun Lu	May 03, 2023
GSE206387	YTHDF2 inhibition potentiates radiotherapy by reprogramming suppressive myeloid cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	46	MTX NARROWPEAK TSV TXT	Chuan He	Apr 28, 2023
GSE222726	Inducible disruption of Tet genes results in myeloid malignancy, readthrough transcription, and a heterochromatin-to-euchromatin switch	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	36	BEDGRAPH MTX TSV TXT	Isaac F. López-Moyado	Apr 17, 2023
GSE214845	Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	150	BIGWIG BW MTX NARROWPEAK RDS TSV TXT	Bernard Klaas van der Veer	Apr 12, 2023
GSE199885	Single substitution in H3.3G34 alters DNMT3A recruitment to cause progressive neurodegeneration	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	62	BW MTX TSV	Claudia L Kleinman	Mar 16, 2023
GSE224563	DNA methylation in the mouse cochlea promotes maturation of supporting cells and contributes to the failure of hair cell regeneration	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED BW COV H5 H5SEURAT MTX RDS TSV	John Duc Nguyen	Feb 07, 2023
GSE165023	Sstr2 knockout mice	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	52	BIGWIG BW MTX TSV	Byoung-Ha Yoon	Jan 04, 2023
GSE212715	Tet2 and Tet3 mediated active cytosine hydroxymethylation in Six2 progenitor cells is critical for nephron progenitor differentiation and nephron endowment	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	4	BW MTX TSV	Xiujie Liang	Nov 23, 2022
GSE216731	LN-stem, tumor stem, tumor terminally differentiated CD8 T cells from human kidney cancer	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	67	CSV MTX TSV XLSX	Haydn Kissick	Nov 03, 2022
GSE178628	Hypoxia induces an early primitive streak signature, enhancing spontaneous elongation and lineage representation in gastruloids	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	27	MTX NARROWPEAK TSV	Natalia Lopez-Anguita	Aug 24, 2022
GSE201665	Inhibition of mutant IDH1 promotes cycling of acute myeloid leukemia stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	32	MTX TSV	Emily Gruber	Aug 17, 2022
GSE204908	Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during early mammalian organogenesis.	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	2617	MTX TSV	Felix Krueger	Jul 19, 2022
GSE158067	Single-cell multi-omics in human clonal hematopoiesis reveals that DNMT3A R882 mutations perturb early progenitor states through selective hypomethylation.	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	26	CSV MTX TSV TXT XLSX SRA Run Selector	Neville Dusaj	Jul 05, 2022
GSE185005	Induction of mouse totipotent stem cells by a defined chemical cocktail	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	18	BW MTX NARROWPEAK TSV	Pengcheng Tan	May 25, 2022
GSE171127	Comparative parallel meta-analysis of cells undergoing reprogramming to pluripotency and trophectoderm states	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	184	BETA BIGWIG MTX TSV TXT SRA Run Selector	Tommy Kaplan	Apr 28, 2022