GEO Browser - GEO

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28 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		SF
GSE247096	RNA-seq and CUT&RUN of erythroblasts upon perturbation of gamma-hemoglobin repressors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	90	BW SF	Alejandro Reyes	Jun 19, 2024
GSE198432	An epigenetic gene signature underlies phenotype switching in early stage melanomas.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Protein profiling by protein array Expression profiling by array	Homo sapiens	300	BW RCC SF	Tiphaine Christiane Martin	May 08, 2024
GSE246062	Shared and distinct interactions of Epstein-Barr Nuclear Antigen 2 type 1 and type 2 with the human genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	43	BW NARROWPEAK SF	Matthew Weirauch	Mar 12, 2024
GSE246616	Fusobacterium nucleatum infection modulates the transcriptome and epigenome of colon cancer cells in an oxygen-dependent manner	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	BW SF	Chang Lu	Feb 07, 2024
GSE247428	CTCF deletion alters the pluripotency and DNA methylation profile of human iPSCs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array	Homo sapiens	10	BIGWIG IDAT NARROWPEAK SF	Wolfgang Wagner	Nov 24, 2023
GSE241893	Differences in syncytia formation by SARS-CoV-2 variants modify host chromatin accessibility and cellular senescence via TP53	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Chlorocebus sabaeus Homo sapiens	146	BW SF TXT	Jonathan David Lee	Sep 30, 2023
GSE243621	Oncogene EVI1 Drives Acute Myeloid Leukemia Via a Targetable Interaction with CTBP2	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	37	BIGWIG NARROWPEAK SF	Ruud Delwel	Sep 20, 2023
GSE235389	Depletion of pyruvate kinase (PK) activity causes glycolytic intermediate imbalances and reveals a PK-TXNIP regulatory axis.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	42	BW NARROWPEAK SF	Robert Schneider	Jul 05, 2023
GSE211202	Co-transcriptional pseudouridylation of mRNAs by the H/ACA complex controls translational efficiency.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	32	BED BW SF	Federico Agostini	Jun 26, 2023
GSE212110	Lamin B1 overexpression alters chromatin organization and gene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	21	BED BIGWIG SF	Juliana S Capitanio	Apr 23, 2023
GSE206377	Integrative dissection of gene regulatory elements at base resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	52	NARROWPEAK SF	Nauman Muhammad Javed	Dec 31, 2022
GSE213909	Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	86	BW HIC NARROWPEAK SF	Marielle Bond	Nov 01, 2022
GSE186942	ETV6 Deficiency Unlocks ERG-Dependent Microsatellite Enhancers to Drive Aberrant Gene Activation in B-Lymphoblastic Leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	97	BW SF	Russell James Hubbard Ryan	Oct 22, 2022
GSE214333	Targeting MLL methyltransferases enhance the anti-tumor effects of PI3K inhibition in hormone receptor-positive breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BEDGRAPH BW SF	Jennifer Marie Spangle	Oct 01, 2022
GSE180586	BAF60c Prevents Abdominal Aortic Aneurysms Formation through Maintaining Vascular Smooth Muscle Cell Homeostasis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	22	BIGWIG SF	Guizhen Zhao	Sep 23, 2022
GSE207954	Global decay of regulatory chromatin architecture promotes rebalancing of gene expression during colorectal cancer development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	104	BED BIGWIG HIC SF	Yizhou Zhu	Aug 27, 2022
GSE208319	Multi-omics characterization of human Embryonic Stem Cells-derived Pharyngeal Endoderm cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	42	BW MTX NARROWPEAK SF TSV	Alessio Colantoni	Jul 20, 2022
GSE182888	JMJD6-DGAT1 Signaling Regulates Lipid Metabolism and Tumorigenesis in ccRCC	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	21	BW NARROWPEAK SF SRA Run Selector	Austin J Hepperla	Jun 27, 2022
GSE196856	Mapping cis-regulatory elements in human excitatory and inhibitory neurons links psychiatric disease heritability and activity-regulated transcriptional programs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	48	SF	Nan Yan	May 30, 2022
GSE187565	Defining the Transcriptional and Epigenetic Basis of Organotypic Endothelial Diversity in the Developing and Adult Mouse II	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BW SF XLS SRA Run Selector	Manuel Eliezer Cantu Gutierrez	May 01, 2022