GEO Browser - GEO

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137 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus		SRA Run Selector
GSE188559	Shared patterns of glial transcriptional dysregulation link Huntington's disease and schizophrenia	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens Rattus norvegicus	2	BW NARROWPEAK TXT SRA Run Selector	Steven Goldman	May 08, 2024
GSE183840	Single cell transcriptomics and chromatin accessibility profiling elucidate the kidney protective mechanism of mineralocorticoid receptor antagonism [snATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	9	RDS TXT SRA Run Selector	Katalin Susztak	Nov 17, 2023
GSE158760	ChIP-seq data from pika Epas1 knock in MAF and RNA-seq data from mouse, rat, rabbit and Tibetan pika fibroblasts	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Ochotona curzoniae Oryctolagus cuniculus Rattus norvegicus	18	BW TXT SRA Run Selector	wang jiawen	Sep 29, 2023
GSE157498	Developmental Reprogramming of Myometrial Stem Cells by Endocrine Disruptor Linking to Risk of Uterine Fibroids [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	4	TDF SRA Run Selector	Qiwei Yang	Aug 07, 2023
GSE147416	An interaction between Gβγ and RNA polymerase II regulates transcription in cardiac fibroblasts	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	17	BW SRA Run Selector	Terence Hébert	Feb 09, 2023
GSE178673	Chromatin landscape in perinatal cardiomyocytes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	28	BED BW GTF HIC SRA Run Selector	Zhang Jing	Feb 03, 2023
GSE185573	Rat oocyte epigenomes	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	6	SRA Run Selector	Hisato Kobayashi	Jan 19, 2023
GSE171399	Acute alcohol produces epigenomic changes in the amygdala	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	12	BED SRA Run Selector	Subhash C Pandey	Sep 22, 2022
GSE185538	Single-nucleus chromatin accessibility and RNA-seq reveal impaired brain development in prenatal e-cigarette exposed neonatal rats	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	8	BED CSV H5 MTX TBI TSV SRA Run Selector	Charles Wang	Jun 20, 2022
GSE151252	RNA polymerase II (RNAPII) ChIP-seq analysis evaluating effects of Cdk7 inhibitor THZ1 on responses of neonatal rat ventricular myocytes (NRVM) to adrenergic receptor agonist phenylephrine (PE)	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	6	WIG SRA Run Selector	Saptarsi Haldar	Apr 25, 2022
GSE159815	The Regulatory Evolution of the Primate Fine-Motor System	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta Mus musculus Rattus norvegicus	33	BIGWIG NARROWPEAK SRA Run Selector	Morgan Wirthlin	Mar 07, 2022
GSE190858	JUN ChIP-seq in injured nerve	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	4	BEDGRAPH TXT SRA Run Selector	John Svaren	Mar 01, 2022
GSE171923	Differential analysis of chromatin accessibility and gene expression profiles identifies cis-regulatory elements in rat adipose and muscle	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	10	NARROWPEAK SRA Run Selector	Venugopalan Nair	Feb 07, 2022
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE182933	Time-restricted feeding prevents deleterious metabolic effects of circadian disruption through epigenetic control of β-cell function [ChIPseq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	2	BED BW SRA Run Selector	Matthew R Brown	Nov 24, 2021
GSE179217	H3K4 di-methylation controls smooth muscle cell lineage identity and vascular homeostasis [CUT&Tag_H3K4me2_FLAG]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	13	BIGWIG XLSX SRA Run Selector	Delphine Gomez	Nov 08, 2021
GSE179218	H3K4 di-methylation controls smooth muscle cell lineage identity and vascular homeostasis [CUT&Tag_HA-TET2]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	3	BIGWIG XLSX SRA Run Selector	Delphine Gomez	Nov 08, 2021
GSE173975	Transcriptional Pathology Evolves Over Time in Rat Hippocampus Following Lateral Fluid Percussion Traumatic Brain Injury	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	22	TXT SRA Run Selector	Alex S. Nord	Oct 31, 2021
GSE140524	Mitochondrial Dysfunction Induces Epigenetic Dysregulation by H3K27 Hyperacetylation to Perturb Active Enhancers in Parkinson’s Disease Models	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Rattus norvegicus	24	BW TXT SRA Run Selector	Zhibin Wang	Oct 13, 2021
GSE173723	Impaired GR expression in liver disrupts feeding induced gene expression, glucose uptake and glycogen storage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	79	BEDGRAPH TXT SRA Run Selector	Lars Grøntved	Sep 08, 2021