GEO Browser - GEO

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464 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Gallus gallus		SRA Run Selector
GSE195869	Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species	Methylation profiling by high throughput sequencing	Abronia anzuetoi Acanthosaura Acanthurus triostegus Accipiter gentilis Accipiter nisus Acinonyx Acomys Acryllium vulturinum Agapornis Agapornis canus Agapornis lilianae Agapornis personatus Agapornis taranta Ailurus fulgens Alectis ciliaris Alitta succinea Amandava subflava Amazona Amazona agilis Amblyglyphidodon leucogaster Ambystoma Ambystoma andersoni Ambystoma mexicanum Ammodytes dubius Ammodytes hexapterus Ammotragus Anas platyrhynchos Anoplopoma fimbria Antidorcas Antilope Aonyx cinereus Aotidae Apodemus flavicollis Apodemus sylvaticus Apostichopus parvimensis Aptenodytes patagonicus Aquila heliaca Ara Ara ararauna Ardea Ariopsis felis Ascidiella aspersa Asio otus Astrochelys radiata Astrochelys yniphora Athene noctua Atherinomorus vaigiensis Axis axis Balearica pavonina Bathymaster signatus Batoidea Bison bonasus Boa constrictor Bodianus diana Boltenia echinata Boltenia ovifera Bos Boselaphus tragocamelus Bothriechis schlegelii Botryllus schlosseri Brachylophus Branchiostoma floridae Bubalus Bubo bubo Buteo Buteo buteo Buteo lagopus Bycanistes bucinator Cacatua alba Caiman yacare Callithrix jacchus Callocephalon fimbriatum Callorhinchus milii Caloenas nicobarica Calyptocephallela gayi Camelus dromedarius Camelus ferus Canis aureus Canis lupus Canis lupus familiaris Canis lupus lycaon Cantherhines pardalis Capra Capra aegagrus Capreolus capreolus Capricornis Capromyidae Capromys pilorides Carcharias taurus Cariamidae Carollia perspicillata Castoridae Casuarius casuarius Caviidae Cebinae Centropomus robalito Centropristis striata Centropyge heraldi Cephalopholis miniata Cercopithecus Cervidae Cervus elaphus Cervus nippon Chaetodon lineolatus Chaetodon lunula Chamaeleo calyptratus Chamaeleonidae Charadriidae Chauna torquata Cheilodipterus quinquelineatus Cheilopogon californicus Chelydra serpentina Chiroxiphia pareola Chloris chloris Chloropsis Choerodon fasciatus Chromis punctipinnis Chrysopelea Ciconia ciconia Ciconiidae Ciona intestinalis Circus aeruginosus Circus cyaneus Cirrhilabrus lineatus Cirrhilabrus roseafascia Clavelina picta Clupea harengus Coccothraustes Coliiformes Colobus guereza Colobus polykomos Columba livia Columbidae Connochaetes Copsychus malabaricus Coracias cyanogaster Coracias garrulus Coris caudimacula Coris gaimard Cornufer guentheri Coronella austriaca Correlophus ciliatus Corucia zebrata Corvus Corvus corax Corvus corone Corvus frugilegus Coryphaenoides acrolepis Coturnix coturnix Coturnix delegorguei Cricetinae Cricetomyinae Cricetus Crocodylia Crotalus Cryptacanthodes maculatus Ctenochaetus striatus Cucumaria frondosa Cuora mccordi Cuora mouhotii Cyanoliseus patagonus Cyanoloxia brissonii Cyclopsitta diophthalma Cyclopterus lumpus Cyclura Cyclura cornuta Cygnus cygnus Cygnus melancoryphus Cynictis Cynomys Cynoscion regalis Cyprinus carpio Dama dama Danio rerio Dascyllus aruanus Dasypodidae Dendrocygna viduata Dinemellia Diodon hystrix Dolichotis Dolichotis patagonum Doryteuthis pealeii Dracaena guianensis Dromaius novaehollandiae Ducula bicolor Duttaphrynus melanostictus Echinarachnius parma Ecsenius Ecteinascidia turbinata Elephas maximus indicus Eliomys quercinus Elops affinis Embiotoca jacksoni Emydidae Equus Equus asinus asinus Equus zebra Erethizon Erinaceidae Erpeton Erythrura Esox lucius Eudyptes chrysocome Eumyias panayensis Eunectes Euplectes Euplectes orix Eurypygidae Falco cherrug Falco peregrinus Falco tinnunculus Felis catus Felis silvestris Fistularia commersonii Folivora Fromia Fromia indica Furcifer pardalis Gadus chalcogrammus Gadus morhua Galeocerdo cuvier Gallicolumba Gallus Gallus gallus Garrulus glandarius Gekkonidae Geochelone Geoemyda spengleri Geopelia placida Geronticus eremita Giraffa giraffa Glis glis Glyptocephalus cynoglossus Glyptocephalus zachirus Graptemys Grus japonensis Grus paradisea Gymnothorax moringa Gypaetus Haemulon flavolineatum Haliaeetus albicilla Haliaeetus leucocephalus Halichoeres trimaculatus Halocynthia pyriformis Heleophrynidae Heloderma Hemilepidotus jordani Hemisphaeriodon Hemitragus Hemitripterus americanus Heterocephalus Hippoglossina oblonga Hippoglossoides elassodon Hippoglossoides platessoides Hippotragus Hippotragus equinus Histrio histrio Holothuria Holothuria atra Holothuria cinerascens Homarus americanus Hoplobatrachus tigerinus Hydrochoerus hydrochaeris Hypanus americanus Hypselecara coryphaenoides Hystricidae Iguanidae Illex illecebrosus Incilius alvarius Irena puella Jacanidae Jaculus Kobus Kobus leche Labroides bicolor Laemanctus Lagostomus maximus Lama glama Lampropeltis Lamprotornis chalcurus Leiocephalus Lemur Leontocebus fuscicollis Leontopithecus Leontopithecus chrysomelas Lepas anatifera Lepidopsetta polyxystra Leptailurus Leptoclinus maculatus Leptoptilos crumenifer Lepus europaeus Lepus timidus Lethenteron camtschaticum Lethrinus atkinsoni Leucoraja erinaceus Leucoraja ocellata Lissemys punctata Loligo vulgaris Lonchura oryzivora Lophius piscatorius Loriculus galgulus Loweina rara Loweina terminata Lumpenus lampretaeformis Lutjanus mahogoni Lutjanus quinquelineatus Lutra lutra Lynx lynx Lyrurus tetrix Lytechinus variegatus Macaca Macaca silenus Macaca sylvanus Macropodidae Macropus Macroscelidea Macroscelides proboscideus Magallana gigas Malacochersus Marmota Martes foina Meles meles Melopsittacus Merops apiaster Merops bullockoides Milvus milvus Mimus polyglottos Molgula citrina Monacanthidae Morone saxatilis Mullus surmuletus Mungos mungo Muntiacus Mus musculus Musophaga Musophagidae Mustela Mustela putorius Mustelidae Mustelus canis Mya arenaria Myocastor coypus Myoxocephalus octodecemspinosus Myzopsetta ferruginea Naja Nanger dama Nardoa novaecaledoniae Nasua Natrix tessellata Nectariniidae Negaprion brevirostris Neoniphon sammara Neurergus Notamacropus parma Notamacropus rufogriseus Nothobranchius furzeri Nyctereutes Nymphicus hollandicus Octopus vulgaris Onuxodon fowleri Ophioderma panamensis Ophiopteris papillosa Ophiothrix spiculata Oplurus Oryctolagus cuniculus Osteoglossum bicirrhosum Ostorhinchus aureus Ostorhinchus moluccensis Ostorhinchus rueppellii Ostrea edulis Otaria Ovis aries Ovis orientalis Oxycercichthys veliferus Oxycheilinus digramma Oxylebius pictus Pachyuromys Panthera leo Panthera onca Panthera pardus Panthera tigris Papio Papio hamadryas Paracanthurus hepatus Paracirrhites forsteri Paralichthys dentatus Parapercis xanthozona Paroedura picta Parupeneus spilurus Parus major Passer domesticus Patiria miniata Pelecanus Pelecanus crispus Penaeus Perdix perdix Petauridae Petaurus breviceps Phalacrocorax carbo Phascolarctos cinereus Phasianus colchicus Philomachus Phloeomys Phocidae Phodopus campbelli Phoenicopteriformes Photoblepharon palpebratum Phyllopteryx taeniolatus Picus viridis Pisaster brevispinus Pisaster giganteus Pithecia pithecia Pitta moluccensis Platax teira Plegadis falcinellus Pleoticus muelleri Pleurogrammus monopterygius Ploceus cucullatus Podothecus accipenserinus Pogona barbata Pollachius virens Polychrus marmoratus Polypedates otilophus Pomacentrus coelestis Pomatomus saltator Pongo Potamochoerus porcus Prionotus carolinus Pristigenys alta Probosciger aterrimus Procyon lotor Psammomys obesus Psarisomus dalhousiae Pseudanthias Pseudanthias ventralis Pseudobalistes fuscus Pseudomonacanthus peroni Psittacus Pterocaesio marri Pteropus Ptilinopus Ptilinopus pulchellus Puma concolor Pycnonotus barbatus Python molurus Python regius Pythonidae Pytilia melba Rangifer tarandus Rattus norvegicus Rattus rattus Recurvirostra avosetta Rhabdamia gracilis Rhacophorus reinwardtii Rhea americana Rhinecanthus aculeatus Rhinocerotidae Rhinogobiops nicholsii Rhinoptera bonasus Rhyticeros narcondami Riftia pachyptila Rollulus Rupicapra rupicapra Saccoglossus kowalevskii Saguinus Saguinus imperator Saguinus mystax Saguinus oedipus Saimiriinae Salmo salar Salmo trutta Salvelinus alpinus Salvelinus umbla Sarcophilus Sauromalus Scandentia Scincidae Sciurus vulgaris Scolopsis bilineata Scophthalmus aquosus Scopus umbretta Scyliorhinus retifer Sebastes atrovirens Sebastes borealis Sebastes caurinus Sebastes chrysomelas Sebastes constellatus Sebastes hopkinsi Sebastes miniatus Sebastes mystinus Sebastes norvegicus Sebastes ovalis Sebastes paucispinis Sebastes semicinctus Sebastolobus alascanus Semicossyphus pulcher Serinus Shinisaurus crocodilurus Spatula querquedula Spermophilus Spheniscus humboldti Sphoeroides maculatus Spinus spinus Squalus acanthias Stenotomus chrysops Stichopus chloronotus Strigiformes Strix aluco Strix uralensis Strongylocentrotus droebachiensis Strongylocentrotus purpuratus Struthio camelus Sturnus vulgaris Styela montereyensis Sufflamen chrysopterum Suricata Sus scrofa Sus scrofa domesticus Sylvia atricapilla Tamias Tamiops Tapirus Taurotragus Tayassuidae Terrapene Testudinidae Testudo hermanni Testudo kleinmanni Tetrao urogallus Tetrastes bonasia Theloderma Theropithecus gelada Thunnus albacares Thyonella gemmata Tiliqua rugosa Tiliqua scincoides Tinca tinca Tockus alboterminatus Tockus deckeni Tockus flavirostris Tockus nasutus Trachemys Trachemys scripta elegans Trachemys scripta scripta Trachyphonus erythrocephalus Tragelaphus angasii Tragelaphus spekii Tragulus javanicus Triglops scepticus Tringa totanus Trioceros jacksonii Tupaia Upupa epops Uraeginthus bengalus Uromastyx Uromastyx ocellata Urophycis tenuis Ursus Ursus arctos Vanellus armatus Varanus Varanus exanthematicus Varanus gouldii Varecia Vermilingua Vicugna Vicugna pacos Vidua paradisaea Vipera ammodytes Vipera berus Vulpes vulpes Xenagama wilmsi Xiphias gladius Yangochiroptera Yinpterochiroptera Zamenis longissimus Zaprora silenus Zenopsis conchifer Zoarces americanus Zosteropidae	3023	BED SRA Run Selector	Christoph Bock	Jun 18, 2022
GSE168088	Sox8 reprogram ectoderm into ear vesicles and auditory neurons [smartseq2]	Expression profiling by high throughput sequencing	Gallus gallus	858	CSV LOOM SRA Run Selector	Andrea Streit	Jul 06, 2022
GSE108221	Single-cell transcriptome analysis of avian neural crest migration reveals signatures of invasion and molecular transitions [scRNA-seq]	Expression profiling by high throughput sequencing	Gallus gallus	501	TXT SRA Run Selector	Madelaine Gogol	Dec 19, 2017
GSE89910	Single-cell sequencing of stage 4 chicken embryos	Expression profiling by high throughput sequencing	Gallus gallus	205	TXT SRA Run Selector	David Vereide	Apr 18, 2018
GSE110145	Genome-wide association study and transcriptome analysis provide new insights into the white/red earlobe color formation in chicken	Genome variation profiling by high throughput sequencing	Gallus gallus	200	TXT SRA Run Selector	Wei Luo	May 05, 2018
GSE160028	Long-read RNA sequencing of cattle, pig, and chicken tissues	Expression profiling by high throughput sequencing	Bos taurus Gallus gallus Sus scrofa	190	GTF TXT SRA Run Selector	Michelle M Halstead	Jan 01, 2021
GSE130500	Reconstruction of the global neural crest gene regulatory network in vivo [RNA-seq]	Expression profiling by high throughput sequencing	Gallus gallus	166	TXT SRA Run Selector	Tatjana Sauka-Spengler	Oct 09, 2019
GSE162142	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription [RNA-Seq across species]	Expression profiling by high throughput sequencing	Canis lupus familiaris Cavia porcellus Felis catus Gallus gallus Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	142	TXT SRA Run Selector	jin long	Apr 20, 2021
GSE93855	Comparative transcriptomic analysis provides insights into high-altitude adaptation	Expression profiling by high throughput sequencing	Bos grunniens Bos taurus Capra hircus Gallus gallus Ovis aries Sus scrofa	138	TXT SRA Run Selector	Mingzhou Li	Sep 06, 2017
GSE41637	Evolutionary dynamics of gene and isoform regulation in mammalian tissues	Expression profiling by high throughput sequencing	Bos taurus Gallus gallus Macaca mulatta Mus musculus Rattus norvegicus	134	GTF SRA Run Selector	Jason Merkin	Dec 21, 2012
GSE192740	Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (single cells)	Expression profiling by high throughput sequencing	Danio rerio Gallus gallus Homo sapiens Macaca mulatta Mesocricetus auratus Mus musculus Sus scrofa	132	H5 RDS TSV TXT SRA Run Selector	Liesbet Martens	Jan 11, 2022
GSE30352	The evolution of gene expression levels in mammalian organs	Expression profiling by high throughput sequencing	Gallus gallus Gorilla gorilla Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus Ornithorhynchus anatinus Pan paniscus Pan troglodytes Pongo pygmaeus	131	SRA Run Selector	Henrik Kaessmann	Oct 13, 2011
GSE124418	Small non-coding RNA transcriptome of four high-altitude vertebrates and their low-altitude relatives	Non-coding RNA profiling by high throughput sequencing	Bos grunniens Bos taurus Gallus gallus Ovis aries Sus scrofa	126	TXT SRA Run Selector	Yao Ma	Aug 19, 2019
GSE165330	Amniotes co-opt intrinsic genetic instability to protect germ-line genome integrity	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Gallus gallus	123	BIGWIG CSV SF TXT SRA Run Selector	Jiafei Shen	Jan 24, 2023
GSE89297	Exploration of the Chicken Pituitary Gland	Expression profiling by high throughput sequencing	Gallus gallus	100	TSV SRA Run Selector	Carl Schmidt	Feb 10, 2017
GSE108348	Transcriptome variations across species, organs and developmental stages	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Gallus gallus Mus musculus Rattus norvegicus	97	TXT SRA Run Selector	Anamaria Necsulea	Sep 26, 2019
GSE68507	Cross-species comparison of epigenetic poising in the mammalian germ line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus	87	TXT SRA Run Selector	Bluma J Lesch	May 07, 2016
GSE179459	Multi-omics association reveals the effects of intestinal microbiome-host interactions on fat deposition in broiler lines divergently selected for abdominal fat content	Expression profiling by high throughput sequencing	Gallus gallus	80	TXT SRA Run Selector	Hui Yuan	Feb 02, 2022
GSE102062	Sex-biased miRNA expression in mouse, opossum and chicken	Non-coding RNA profiling by high throughput sequencing	Gallus gallus Monodelphis domestica Mus musculus	76	BED TXT SRA Run Selector	Maria Warnefors	Nov 01, 2017
GSE73423	RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations	Expression profiling by high throughput sequencing	Gallus gallus	63	TXT SRA Run Selector	Tina Sorensen Dalgaard	Jan 25, 2016