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Series GSE165330 Query DataSets for GSE165330
Status Public on Jan 24, 2023
Title Amniotes co-opt intrinsic genetic instability to protect germ-line genome integrity
Organism Gallus gallus
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Genome variation profiling by high throughput sequencing
Other
Summary We applied high-throughput sequencing on rooster testis samples.
 
Overall design High-throughput sequencing data including RNAseq, small-RNA seq and ONT of rooster testis. All sequencing data were sequenced on Illumina platform and Oxford Nanopore Technologies.
 
Contributor(s) Shen JT, Sun YH, Li XZ
Citation(s) 36781861
Submission date Jan 22, 2021
Last update date May 31, 2023
Contact name Jiafei Shen
E-mail(s) shenjiafei0118@yahoo.com
Phone 13201907629
Organization name International Institutes of Medicine, The Fourth Affiliated Hospital, Zhejiang University School of Medicine
Street address N1 Shangcheng Road
City Yiwu
ZIP/Postal code 322000
Country China
 
Platforms (2)
GPL16133 Illumina HiSeq 2000 (Gallus gallus)
GPL29297 PromethION (Gallus gallus)
Samples (123)
GSM5031665 RNAseq.Red.Jungle.Fowl.Davis.testis.wt.adult.rep1
GSM5031666 RNAseq.Red.Jungle.Fowl.Davis.testis.wt.adult.rep2
GSM5031667 SmallRNA.Red.Jungle.Fowl.Davis.testis.wt.adult.ox.rep1
Relations
BioProject PRJNA694114
SRA SRP302879

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE165330_RAW.tar 796.2 Mb (http)(custom) TAR (of BIGWIG, SF, TXT)
GSE165330_SixRoosterMerged.sorted.bam.Sniffles.1read.vcf.txt.gz 37.3 Mb (ftp)(http) TXT
GSE165330_chicken.piRNA.abundance.csv.gz 28.3 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file
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