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15 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Agathobacter rectalis
GSE122256	Detection of carbohydrate-active enzyme genes in the rumen of young lambs	Genome variation profiling by array	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Microbiota Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens uncultured Neocallimastigales	6		TXT	Evelyne Forano	Oct 01, 2019
GSE107550	The FibroChip, a functional DNA microarray to monitor cellulolysis and hemicellulolysis activities of rumen microbiota	Expression profiling by array Other	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bacteroides xylanisolvens XB1A Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Escherichia coli K-12 Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Fibrobacter succinogenes subsp. succinogenes S85 Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens bovine gut metagenome uncultured Neocallimastigales	14		TXT	Sophie Comtet-Marre	Dec 01, 2017
GSE65455	Characterizing the interactions between a naturally-primed IgA (mAb 260.8) and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice [array]	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	12		CEL	Joseph D Planer	Jun 29, 2015
GSE65456	Characterizing the interactions between a naturally-primed IgA (mAb 260.8) and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice	Expression profiling by high throughput sequencing Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	22		CEL TXT	Joseph D Planer	Jun 29, 2015
GSE38534	Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Bifidobacterium longum Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	12		CEL	Michaela Anne TerAvest	Jan 01, 2014
GSE34966	Chronic colitis in Bacteroides Thetaiotaomicron-Monoassociated HLA-B27 Transgenic rats alters expression of receptor and metabolic genes in luminal bacteria.	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	6		CEL	Yong Huang	Jan 11, 2012
GSE25537	Methanobrevibacter smithii expression profiling	Expression profiling by array Expression profiling by high throughput sequencing	Agathobacter rectalis Bacteroides thetaiotaomicron Lachnospira eligens Methanobrevibacter smithii Methanobrevibacter smithii ATCC 35061 Parabacteroides distasonis Phocaeicola vulgatus	80		CEL TXT	Federico E Rey	Nov 07, 2011
GSE25572	Depolymerization of plant cell wall glycans by symbiotic human gut bacteria (Bacteroides thetaiotaomicron)	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	14		CEL	Eric Charles Martens	May 01, 2011
GSE25576	Depolymerization of plant cell wall glycans by symbiotic human gut bacteria	Expression profiling by array	Agathobacter rectalis Agathobacter rectalis ATCC 33656 Bacteroides caccae ATCC 43185 Bacteroides ovatus Bacteroides ovatus ATCC 8483 Bacteroides sp. WH2 Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Bacteroides uniformis ATCC 8492 Blautia obeum ATCC 29174 Collinsella aerofaciens ATCC 25986 Dorea longicatena DSM 13814 Faecalibacterium prausnitzii M21/2 Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Parabacteroides distasonis ATCC 8503 Phocaeicola vulgatus Phocaeicola vulgatus ATCC 8482 Thomasclavelia spiroformis DSM 1552 [Clostridium] scindens ATCC 35704 [Ruminococcus] torques ATCC 27756	39		CEL	Eric Charles Martens	May 01, 2011
GSE25535	Expression data from an in vitro growth of Methanobrevibacter smithii PS	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Lachnospira eligens Methanobrevibacter smithii Methanobrevibacter smithii ATCC 35061 Parabacteroides distasonis Phocaeicola vulgatus	4		CEL	Federico E Rey	Mar 30, 2011
GSE25415	Transcription analysis of wild-type and chuR Bacteroides thetaiotaomicron genes in the mouse cecum	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Bifidobacterium animalis Bifidobacterium longum Lacticaseibacillus casei Lactobacillus delbrueckii Streptococcus thermophilus	12		CEL	Eric Charles Martens	Jan 01, 2011
GSE14709	Transcriptional profile of B. theta and E. rectale growing in the cecum of mice fed different diets	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	15		CEL	Federico E Rey	Mar 01, 2009
GSE14737	Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	16		CEL	Federico E Rey	Mar 01, 2009
GSE11962	Growth of B. thetaiotaomicron on purified host mucosal glycans and glycan fragments	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	18		CEL	Eric Charles Martens	Nov 21, 2008
GSE11980	Glycan effect on Saccharolytic Human Distal Gut Symbiont, B. thetaiotaomicron	Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Bifidobacterium longum Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	48		CEL	Eric Charles Martens	Nov 21, 2008