GEO Browser - GEO

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76 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Sorghum bicolor
GSE19768	UV-B regulation of microRNAs in maize	Non-coding RNA profiling by array	Arabidopsis thaliana Brassica napus Glycine max Gossypium hirsutum Medicago truncatula Oryza sativa Physcomitrium patens Pinus taeda Populus trichocarpa Saccharum officinarum Selaginella moellendorffii Solanum lycopersicum Sorghum bicolor Triticum aestivum Vitis vinifera Zea mays	2	TXT	Paula Casati	Oct 31, 2013
GSE20263	Small RNAs in different tissues and phloem of oilseed rape under nutrient stress conditions	Non-coding RNA profiling by array	Arabidopsis thaliana Brassica napus Brassica oleracea Brassica rapa Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Pinus taeda Populus trichocarpa Saccharum officinarum Selaginella moellendorffii Sorghum bicolor Triticum aestivum Vitis vinifera Zea mays	10	TXT	Anja Buhtz	Feb 24, 2010
GSE28755	Comparative sequence analysis of plant small RNAs	Non-coding RNA profiling by high throughput sequencing	Amborella trichopoda Aristolochia fimbriata Capsicum annuum Carica papaya Chara corallina Chlamydomonas reinhardtii Citrus sinensis Cucurbita maxima Cycas rumphii Erythranthe guttata Ginkgo biloba Gossypium arboreum Hordeum vulgare Lactuca sativa Marsilea quadrifolia Miscanthus x giganteus Musa acuminata Nicotiana tabacum Nuphar advena Panicum virgatum Persea americana Petunia x hybrida Picea abies Populus trichocarpa Setaria italica Silene latifolia Solanum lycopersicum Solanum tuberosum Sorghum bicolor Triticum aestivum Vitis vinifera Volvox carteri Zea mays Zostera marina	99	TXT	Emanuele De Paoli	May 10, 2011
GSE30249	RNA-Seq of Sorghum bicolor 9d seedlings in response to osmotic stress and abscisic acid	Expression profiling by high throughput sequencing	Sorghum bicolor	24	CSV SRA Run Selector	Patricia E Klein	Oct 27, 2011
GSE31373	miRNA expression data from low nitrate culture in leaf and root of maize	Non-coding RNA profiling by array	Arabidopsis thaliana Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Populus trichocarpa Saccharum officinarum Sorghum bicolor Zea mays	12		Chuanxiao Xie	Sep 01, 2011
GSE31492	miRNA expression data from low nitrate cultures in maize	Non-coding RNA profiling by array	Arabidopsis thaliana Glycine max Medicago truncatula Oryza sativa Physcomitrium patens Populus trichocarpa Saccharum officinarum Sorghum bicolor Zea mays Zea mays subsp. mays synthetic construct	21	CEL	Chuanxiao Xie	Sep 01, 2011
GSE32458	High-throughput sequencing of small RNAs in Sorghum bicolor	Non-coding RNA profiling by high throughput sequencing	Sorghum bicolor	3	TXT	Emanuele De Paoli	Sep 30, 2011
GSE33237	Genome-wide profiling of small RNAs in sorghum under abiotic stresses	Non-coding RNA profiling by high throughput sequencing	Sorghum bicolor	4	SRA Run Selector	Renyi Liu	Oct 25, 2015
GSE33391	Cross-species Detection in Barley1 GeneChip Array	Expression profiling by array	Avena sativa Hordeum vulgare Oryza sativa Sorghum bicolor Triticum aestivum Zea mays	12	CEL	PLEXdb Curator, Sudhansu Dash	Nov 22, 2011
GSE35606	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells (miRNA)	Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	4	GPR	Janet M. Young	Apr 02, 2012
GSE35921	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells	Expression profiling by array Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	16	GPR	Janet M. Young	Apr 02, 2012
GSE36689	Sorghum gene expression using Agilent custom 4x44K Microarray	Expression profiling by array	Sorghum bicolor	12	TXT	Shu-Ye Jiang	Apr 08, 2012
GSE48205	Transcriptomic analysis of Sorghum bicolor responding to combined heat and drought stress	Expression profiling by array	Sorghum bicolor	12	TXT	Fei Ling Lim	Jun 20, 2014
GSE49879	Expression data from vegetative tissues of grain, sweet and bioenergy sorghums	Expression profiling by array Non-coding RNA profiling by array	Saccharum hybrid cultivar Sorghum bicolor Zea mays subsp. mays	78	CEL	Nadia Shakoor	Dec 31, 2013
GSE50464	RNA-Seq and BS-Seq of Sorghum bicolor tissues	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Sorghum bicolor	14	BED GTF SRA Run Selector	Andrew J Olson	Aug 29, 2014
GSE51590	Differential expression of miRNAs in Brassica napus root following infection with Plasmodiophora brassicae	Non-coding RNA profiling by array	Brassica napus Cenchrus americanus Cenchrus ciliaris Hordeum vulgare Hordeum vulgare subsp. vulgare Ipomoea batatas Ipomoea nil Lactuca sativa Liriodendron tulipifera Lolium arundinaceum Lotus japonicus Lupinus luteus Malcolmia maritima Malus domestica Manihot esculenta Medicago truncatula Nasturtium officinale Nicotiana benthamiana Nicotiana sylvestris Nicotiana tabacum Nuphar advena Oenocarpus bataua Oryza barthii Oryza brachyantha Oryza nivara Oryza rufipogon Oryza sativa Panicum virgatum Peridictyon sanctum Persea americana Petunia x hybrida Phaseolus coccineus Phaseolus vulgaris Phleum pratense Physcomitrium patens Picea glauca Picea sitchensis Pinus taeda Populus tremula Populus tremula x Populus tremuloides Populus tremuloides Populus trichocarpa Populus trichocarpa x Populus deltoides Prunus armeniaca Prunus persica Prunus salicina Ricinus communis Rorippa indica Sorghum bicolor	4	TXT	Sanjay Gupta	Nov 28, 2013
GSE54705	Sorghum nitrogen stress tolerance	Expression profiling by high throughput sequencing	Sorghum bicolor	28	TXT SRA Run Selector	Chi Zhang	May 01, 2014
GSE70903	DNA Methylation and Gene Expression Regulation Associated with Vascularization in Sorghum bicolor	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Sorghum bicolor	16	TXT SRA Run Selector	Gina Marie Turco	Dec 30, 2016
GSE72155	FASTmC: predictive models for non-reference-based estimations of DNA methylation	Methylation profiling by high throughput sequencing	Brachypodium distachyon Brassica oleracea Erythranthe guttata Populus trichocarpa Sorghum bicolor	5	TSV SRA Run Selector	Adam James Bewick	Aug 17, 2016
GSE79389	RNA-seq Transcriptome Profiling of Tiller Buds in the First Leaf Axil of Phytochrome B mutant (phyB-1) and Wild-type Sorghum from Initiation to Dormancy (phyB-1) and Outgrowth (wild-type)	Expression profiling by high throughput sequencing	Sorghum bicolor	18	XLSX SRA Run Selector	John Mullet	Mar 30, 2017