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96 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Drosophila simulans
GSE274048	RNA-seq samples from male sex organs in Drosophila	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila biarmipes Drosophila bipectinata Drosophila elegans Drosophila eugracilis Drosophila ficusphila Drosophila kikkawai Drosophila melanogaster Drosophila simulans Drosophila takahashii Drosophila yakuba	176	TXT	Ben Hopkins	Oct 15, 2024
GSE263982	Molecular insights into female hybrid sterility in interspecific crosses between Drosophila melanogaster and Drosophila simulans (RNA-Seq)	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila melanogaster x Drosophila simulans Drosophila simulans	6	CSV	Alexei A. Kotov	May 30, 2024
GSE263983	Molecular insights into female hybrid sterility in interspecific crosses between Drosophila melanogaster and Drosophila simulans (small RNA-Seq)	Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster Drosophila melanogaster x Drosophila simulans Drosophila simulans	6	CSV	Alexei A. Kotov	May 30, 2024
GSE263985	Molecular insights into female hybrid sterility in interspecific crosses between Drosophila melanogaster and Drosophila simulans	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster Drosophila melanogaster x Drosophila simulans Drosophila simulans	12		Alexei A. Kotov	May 30, 2024
GSE247965	Comparative single-cell transcriptomic atlases reveal conserved and divergent features of drosophilid central brains	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila sechellia Drosophila simulans	24	MTX TSV	Daehan Lee	Nov 21, 2023
GSE225887	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [RNA-Seq]	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila azteca Drosophila biarmipes Drosophila bifasciata Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila subobscura Drosophila suzukii Drosophila takahashii Drosophila virilis Drosophila yakuba	35	BW	Susanne Bornelöv	Sep 26, 2023
GSE225888	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [small RNA-Seq]	Non-coding RNA profiling by high throughput sequencing	Drosophila ananassae Drosophila azteca Drosophila biarmipes Drosophila bifasciata Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila subobscura Drosophila suzukii Drosophila takahashii Drosophila virilis Drosophila yakuba	65	BW	Susanne Bornelöv	Sep 26, 2023
GSE225889	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila ananassae Drosophila azteca Drosophila biarmipes Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila subobscura Drosophila suzukii Drosophila takahashii Drosophila virilis Drosophila yakuba	118	BW NARROWPEAK	Susanne Bornelöv	Sep 26, 2023
GSE240910	Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila biarmipes Drosophila erecta Drosophila ficusphila Drosophila melanogaster Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila suzukii Drosophila yakuba	18	BW NARROWPEAK	Susanne Bornelöv	Sep 26, 2023
GSE230111	Regulatory logic of endogenous RNAi in silencing de novo genomic conflicts	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster Drosophila simulans	24	BW	Jeffrey Vedanayagam	May 23, 2023
GSE190885	Trans regulatory evolution of a young microRNA during Drosophila spermatogenesis	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila simulans	122	TXT SRA Run Selector	Yumei Huang	Jul 13, 2022
GSE185361	Rapid evolutionary dynamics of an expanding family of Drosophila meiotic drive factors and their hpRNA suppressors	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila mauritiana Drosophila sechellia Drosophila simulans	11	BW SRA Run Selector	Jeffrey Vedanayagam	Oct 07, 2021
GSE185176	Genomics analysis of hexanoic acid exposure in Drosophila species	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila sechellia Drosophila simulans	18	TXT SRA Run Selector	Joseph Coolon	Oct 04, 2021
GSE136646	Evolved differences in cis and trans regulation between the maternal and zygotic mRNA complements in the Drosophila embryo	Expression profiling by high throughput sequencing	Drosophila mauritiana Drosophila mauritiana x Drosophila sechellia Drosophila mauritiana x Drosophila simulans Drosophila sechellia Drosophila sechellia x Drosophila mauritiana Drosophila simulans Drosophila simulans x Drosophila mauritiana Drosophila simulans x Drosophila sechellia	63	TXT SRA Run Selector	Susan E. Lott	Nov 24, 2020
GSE100837	Comparative transcriptomics in the Drosophila Auditory Organ	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila persimilis Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	5	TXT SRA Run Selector	Stein Aerts	Jul 05, 2020
GSE59707	Evolutionary changes in cis regulation are associated with altered chromatin activity and gene expression levels in the Drosophila eye development (RNA-Seq)	Expression profiling by high throughput sequencing	Drosophila ananassae Drosophila melanogaster Drosophila mojavensis Drosophila pseudoobscura Drosophila simulans Drosophila virilis Drosophila willistoni Drosophila yakuba	27	TXT SRA Run Selector	Stein Aerts	May 02, 2020
GSE124142	Total RNA from different species fly heads	Expression profiling by high throughput sequencing	Drosophila simulans Drosophila virilis Drosophila yakuba	18	TXT SRA Run Selector	Sebastian Kadener	Dec 03, 2019
GSE124136	Differences in circadian rhythms in fly at different temperatures	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array	Drosophila melanogaster Drosophila simulans Drosophila virilis Drosophila yakuba	104	CEL	Sebastian Kadener	Dec 02, 2019
GSE138119	Genomics analysis of L-DOPA exposure in Drosophila sechellia	Expression profiling by high throughput sequencing	Drosophila melanogaster Drosophila sechellia Drosophila simulans	18	TXT SRA Run Selector	Joseph Coolon	Sep 28, 2019
GSE112858	Evolution of maternal and zygotic mRNA complements in the early Drosophila embryo	Expression profiling by high throughput sequencing Third-party reanalysis	Drosophila ananassae Drosophila erecta Drosophila mauritiana Drosophila melanogaster Drosophila miranda Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila santomea Drosophila sechellia Drosophila simulans Drosophila virilis Drosophila willistoni Drosophila yakuba	119	TXT	Susan E. Lott	Dec 04, 2018