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67 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Oryzias latipes
GSE97860	cis-regulatory logic of Shh expression reveals common history of unpaired and paired fins	Other	Mus musculus Oryzias latipes	4	BEDGRAPH SRA Run Selector	Juan J. Tena	Nov 23, 2017
GSE33360	Discovery of novel microRNAs in rat kidney using microarray analyses	Non-coding RNA profiling by array	Ateles geoffroyi Bos taurus Canis lupus familiaris Danio rerio Equus caballus Gallus gallus Homo sapiens Macaca mulatta Macaca nemestrina Mus musculus Ornithorhynchus anatinus Oryzias latipes Ovis aries Pan paniscus Pan troglodytes Petromyzon marinus Pongo pygmaeus Rattus norvegicus Rhinopithecus bieti Saguinus labiatus Sus scrofa Symphalangus syndactylus Taeniopygia guttata Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis	6	TXT	Fanxue Meng	Nov 02, 2011
GSE80823	Identification of novel ovarian predominant miRNAs in medaka	Non-coding RNA profiling by array	Oryzias latipes	39	TXT	Julien Bobe	Aug 31, 2016
GSE90960	Identification of miR-210 as a new myo-miR in trout	Non-coding RNA profiling by array	Oncorhynchus mykiss Oryzias latipes	12	TXT	Aurelie LE CAM	Aug 01, 2017
GSE98646	Structural basis of epigenetic protection of mouse lymphoid progenitor cells by Dnmt1 (Medaka)	Methylation profiling by high throughput sequencing	Oryzias latipes	6	TSV SRA Run Selector	Thomas Boehm	Jul 07, 2020
GSE98648	Structural basis of epigenetic protection of mouse lymphoid progenitor cells by Dnmt1	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Mus musculus Oryzias latipes	48		Thomas Boehm	Jul 07, 2020
GSE128797	Bisulfite sequencing of medaka sperm methylomes	Methylation profiling by high throughput sequencing	Oryzias latipes	3	BEDGRAPH SRA Run Selector	Ramji Kumar Bhandari	Apr 23, 2019
GSE130002	Bisulfite sequencing of medaka PGCs methylomes	Methylation profiling by high throughput sequencing	Oryzias latipes	15	BEDGRAPH SRA Run Selector	Ramji Kumar Bhandari	Dec 25, 2019
GSE46351	H3K27ac and H3K4me3 ChIP-seq in Oryzias latipes	Genome binding/occupancy profiling by high throughput sequencing	Oryzias latipes	3	BED WIG SRA Run Selector	Juan J. Tena	Mar 25, 2014
GSE106428	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Oryzias latipes	29	BED SRA Run Selector	Juan J. Tena	Aug 15, 2018
GSE106431	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Oryzias latipes	217	BED BEDGRAPH TXT	Juan J. Tena	Aug 15, 2018
GSE120531	Identification and functional analysis of yap1b: a new Yap family member in teleosts that evolved a divergent transcriptional activation domain.	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Oryzias latipes	6	BED BW SRA Run Selector	Javier Vázquez-Marín	Jun 01, 2019
GSE136027	Dynamic Transcriptional and Chromatin Accessibility Landscape of Medaka Embryogenesis	Genome binding/occupancy profiling by high throughput sequencing	Oryzias latipes	18	BED BW SRA Run Selector	Yongjie Liu	Jun 16, 2020
GSE46484	RNA-seq in Oryzias latipes at stage 24	Expression profiling by high throughput sequencing	Oryzias latipes	2	RPKM SRA Run Selector	Juan J. Tena	Mar 25, 2014
GSE62700	Transcriptomic characterization of transcription activator-like effector nucleases-induced XY dmy- sex reversal female medaka (Oryzias latipes)	Expression profiling by high throughput sequencing	Oryzias latipes	3	TXT SRA Run Selector	Daji Luo	Feb 11, 2017
GSE80497	Gene expression profiling of optic tectum neuroepithelial cells in adult medaka	Expression profiling by high throughput sequencing	Oryzias latipes	8	XLS XLSX SRA Run Selector	Emilie Dambroise	Apr 20, 2019
GSE87168	Global transcriptional response in Japanese medaka larvae following embryonic exposure to TCDD	Expression profiling by high throughput sequencing	Oryzias latipes	6	CSV SRA Run Selector	AtLee Watson	Mar 07, 2017
GSE94617	Comparative transcriptome profiling of zebrafish and medaka hearts following cardiac cryoinjury	Expression profiling by high throughput sequencing	Danio rerio Oryzias latipes	29	TXT SRA Run Selector	Shih-Lei Ben Lai	Jun 20, 2017
GSE106430	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [RNA-Seq]	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Oryzias latipes	81	TXT SRA Run Selector	Juan J. Tena	Aug 15, 2018
GSE114190	Modulation of medaka transcriptome by trametinib and cisplatin	Expression profiling by high throughput sequencing	Oryzias latipes	60	CSV SRA Run Selector	Yuan Lu	May 18, 2021