GEO Browser - GEO

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228 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					BAM
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17312	BI Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	633	BAM BED CEL WIG SRA Run Selector	BROAD INSTITUTE	Aug 05, 2009
GSE17593	Melanoma short-term cultures and cell lines: expression profiling and CNV analyses	Expression profiling by array Genome variation profiling by SNP array Expression profiling by high throughput sequencing	Homo sapiens	41	BAM CEL	Michael Berger	Feb 01, 2010
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE19409	Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BAM TXT SRA Run Selector	Shaun Mahony	Dec 10, 2010
GSE19450	Rapid and synchronous clearance of PcG histone modifications from Hox genes anticipates motor neuron differentiation	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Mus musculus	33	BAM TXT	Shaun Mahony	Dec 13, 2012
GSE20156	RNA-Seq of melanoma short-term cultures and cell lines	Expression profiling by high throughput sequencing	Homo sapiens	14	BAM SRA Run Selector	Michael Berger	Feb 04, 2010
GSE21714	Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM GFF SRA Run Selector	Gareth Wilson	Jan 01, 2011
GSE21823	Nucleosome map of the IMR90 fibroblast cell line	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	BAM SRA Run Selector	Benjamin Berman	Apr 01, 2011
GSE21977	De novo transcriptome sequencing in Anopheles funestus using Illumina RNA-seq technology	Expression profiling by high throughput sequencing Other	Anopheles funestus	1	BAM SRA Run Selector	Jacob Crawford	Dec 01, 2010
GSE23716	H3K27me3 is not required for recruitment of Polycomb repressor complex 1 to target loci in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BAM GFF3 SRA Run Selector	Stephen Taylor	Nov 30, 2011
GSE24012	Transcriptional profiling of EJC depletion by RNA-Seq using the SOLiD platform (Applied Biosystems)	Expression profiling by high throughput sequencing	Drosophila melanogaster	6	BAM TXT WIG SRA Run Selector	Hugo Lavoie	Oct 20, 2010
GSE24178	Genome wide localization of Activation induced cytidine deaminase (AID), Spt5, and RNA Polymerase II (PolII) in mouse	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BAM BEDGRAPH SRA Run Selector	Seolkyoung Jung	Oct 05, 2010
GSE24438	Genome wide maps of Dmc1 in testis of Hop2 null mice.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BAM BED SRA Run Selector	Ivan Gregoretti	Apr 04, 2011
GSE24565	Small RNA-seq from ENCODE/Cold Spring Harbor Lab	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	87	BAM BEDRNAELEMENTS BIGWIG GTF PDF TXT SRA Run Selector	ENCODE DCC	Oct 08, 2010
GSE24632	ZNF274 colocalizes with the histone methyltransferase SETDB1 at ZNF 3' ends.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	BAM BED BEDGRAPH BIGWIG TAGALIGN SRA Run Selector	Philip Cayting	Nov 15, 2010
GSE24685	Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	15	BAM BED BIGWIG TAGALIGN SRA Run Selector	Philip Cayting	Nov 15, 2010
GSE24958	Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA editing targets in transcript 3'UTRs	Expression profiling by high throughput sequencing	Mus musculus	2	BAM SRA Run Selector	Brad Rosenberg	Jan 23, 2011
GSE25183	Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression (RNA-Seq data)	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	58	BAM SRA Run Selector	Matthew Iyer	Aug 02, 2011