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Platform GPL10333 Query DataSets for GPL10333
Status Public on Apr 15, 2010
Title Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Mouse Content Refresh 44k

Arrays of this design have barcodes that begin with 16026655 or 2526655.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL11202.
 
Submission date Apr 15, 2010
Last update date Jan 19, 2018
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (2091) GSM715867, GSM715868, GSM715869, GSM715870, GSM715871, GSM715872 
Series (227)
GSE28891 Foxl1-Cre-marked Adult Hepatic Progenitors Have Clonogenic and Bi-Lineage Differentiation Potential - Differentiated vs Primary
GSE28892 Foxl1-Cre-marked Adult Hepatic Progenitors Have Clonogenic and Bi-Lineage Differentiation Potential
GSE29432 Musashi 2 is a regulator of the hematopoietic stem cell compartment identified by a retroviral insertion screen and knockout mice
Relations
Alternative to GPL11202
Alternative to GPL20889 (Gene name version)
Affiliated with GPL19795
Affiliated with GPL24228

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 A_55_P1989846 A_55_P1989846 FALSE NM_145375 NM_145375 107769 Tm6sf1 transmembrane 6 superfamily member 1 Mm.221412 ENSMUST00000119543 ref|NM_145375|ens|ENSMUST00000119543|ens|ENSMUST00000041890|gb|AK136581 chr7:89028246-89028305 mm|7qD3 Mus musculus transmembrane 6 superfamily member 1 (Tm6sf1), mRNA [NM_145375] GO:0016020(membrane)|GO:0016021(integral to membrane) ATCCCGAGTTCTTCCTAAGAACTAAGGCAGATGAGAAGTTGGAATAAACAAACATACCTC
13 266 146 A_55_P1991598 A_55_P1991598 FALSE BC025441 Mm.38384 ENSMUST00000106723 ens|ENSMUST00000106723|gb|BC025441|tc|NP437391 chr3:107110557-107110616 mm|3qF2.3 solute carrier family 16, member 4 [Source:RefSeq peptide;Acc:NP_666248] [ENSMUST00000106723] CCAGCTTCACTCTGACTCAGCATTCCTAAGATTGATGAATATCTATGAAAACATCAAAAA
14 266 144 A_55_P2022211 A_55_P2022211 FALSE NM_026162 NM_026162 67448 Plxdc2 plexin domain containing 2 Mm.313938 ENSMUST00000114703 ref|NM_026162|ens|ENSMUST00000114703|ens|ENSMUST00000028081|ens|ENSMUST00000114702 chr2:16673217-16673276 mm|2qA3 Mus musculus plexin domain containing 2 (Plxdc2), mRNA [NM_026162] GO:0005886(plasma membrane)|GO:0016020(membrane)|GO:0016021(integral to membrane) GTGACGAGATGACGATGCTTTTGGTTTAGGTGCAGGGTTGCAAAGAAATCAAGGAAAAAA
15 266 142 A_55_P1980764 A_55_P1980764 FALSE XM_001474007 XM_001474007 100047485 LOC100047485 hypothetical protein LOC100047485 ENSMUST00000062827 ref|XM_001474007|ens|ENSMUST00000062827|gb|AK047830|riken|C130002K19 chr17:23841606-23841547 mm|17qA3.3 PREDICTED: Mus musculus hypothetical protein LOC100047485 (LOC100047485), mRNA [XM_001474007] TTTGCTAACGTTGTTAAAGAGGCTGGGTGTGATGGCTGCATTCTAACCGTGAAAGTGTGT
16 266 140 A_55_P1964375 A_55_P1964375 FALSE NR_003107 NR_003107 732482 Gm9731 Fam58a pseudogene ref|NR_003107 chr8:28407450-28407509 mm|8qA2 Mus musculus predicted gene 9731 (Gm9731), non-coding RNA [NR_003107] AGAACCTCTTTGTGGGCAGGACATATAGAGCTTTCTAGAATTGGCTGCATCAGCTTTTGC
17 266 138 A_51_P128876 A_51_P128876 FALSE NM_025378 NM_025378 66141 Ifitm3 interferon induced transmembrane protein 3 Mm.141021 ENSMUST00000026565 ref|NM_025378|ens|ENSMUST00000026565|gb|AK007919|gb|AK003407 chr7:148195650-148195591 mm|7qF5 Mus musculus interferon induced transmembrane protein 3 (Ifitm3), mRNA [NM_025378] GO:0008285(negative regulation of cell proliferation)|GO:0016021(integral to membrane)|GO:0016023(cytoplasmic membrane-bounded vesicle) CTTAACGCTCAAAACCTTCACACTTAATAGAGGATTCCGACTTCCGGTCCTGAAGTGCTT
18 266 136 A_55_P2121042 A_55_P2121042 FALSE NM_001082531 NM_001082531 18780 Pla2g2a phospholipase A2, group IIA (platelets, synovial fluid) Mm.4675 ENSMUST00000077582 ref|NM_001082531|ref|NR_002926|ens|ENSMUST00000077582|gb|U32359 chr4:138390748-138390807 mm|4qD3 Mus musculus phospholipase A2, group IIA (platelets, synovial fluid) (Pla2g2a), mRNA [NM_001082531] GO:0004623(phospholipase A2 activity)|GO:0005509(calcium ion binding)|GO:0005739(mitochondrion)|GO:0006644(phospholipid metabolic process)|GO:0008285(negative regulation of cell proliferation)|GO:0016020(membrane)|GO:0016042(lipid catabolic process)|GO:0016787(hydrolase activity)|GO:0035019(somatic stem cell maintenance)|GO:0040008(regulation of growth)|GO:0042127(regulation of cell proliferation)|GO:0046872(metal ion binding)|GO:0050678(regulation of epithelial cell proliferation)|GO:0050680(negative regulation of epithelial cell proliferation) AGTTTAAAGTACCAGTTCTACCCCAACATGTTTTGCAAAGGGAAGAAGCCCAAATGCTGA
19 266 134 A_52_P219230 A_52_P219230 FALSE NM_178611 NM_178611 52855 Lair1 leukocyte-associated Ig-like receptor 1 Mm.290880 ref|NM_178611|ref|NM_001113474|gb|AK033472|riken|9030216F02 chr7:3959493-3959434 mm|7qA1 Mus musculus leukocyte-associated Ig-like receptor 1 (Lair1), transcript variant b, mRNA [NM_178611] GO:0004872(receptor activity)|GO:0005886(plasma membrane)|GO:0016020(membrane)|GO:0016021(integral to membrane) CCTGATTGTTAAAACAATGCTTTCCTAAAAAATGCCCAGTAAGAAATCCTCTCACAAGGA
20 266 132 A_51_P207591 A_51_P207591 FALSE NM_013473 NM_013473 11752 Anxa8 annexin A8 Mm.3267 ENSMUST00000022519 ref|NM_013473|ens|ENSMUST00000022519|gb|AK075870|gb|AJ002390 chr14:34913661-34913720 mm|14qB Mus musculus annexin A8 (Anxa8), mRNA [NM_013473] GO:0005509(calcium ion binding)|GO:0005544(calcium-dependent phospholipid binding)|GO:0007596(blood coagulation) ATCCTCTGATCGTGGTCTCCGAGCCTGAAGAACATGACAGAACTCTTCTCAATATTCGTT

Total number of rows: 45220

Table truncated, full table size 23562 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL10333_old_annotations.txt.gz 6.5 Mb (ftp)(http) TXT

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