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Status
Public on Aug 01, 2011
Title
WUSTL Yersinia pestis 14K array
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Yersinia pestis Manufacturer
Washington University School of Medicine
Manufacture protocol
Oligos were synthesized using standard methods by Illumina (San Diego, CA). The oligonucleotides were dissolved at a concentration of 50 μM in 3X SSC with 0.75M betaine and were printed in triplicate on Corning Epoxy slides by a locally constructed linear servo arrayer.
Coating
epoxy
Submission date
May 19, 2010
Last update date
Aug 01, 2011
Contact name
Chris Minion
E-mail(s)
fcminion@iastate.edu Phone
515-294-6347
Fax
515-294-8500
Organization name
Iowa State University
Department
VMPM
Street address
1130 Vet Med
City
Ames
State/province
IA
ZIP/Postal code
50011
Country
USA
Samples (54)
GSM545139 , GSM545140 , GSM545141 , GSM545142 , GSM545143 , GSM545144
GSM564769 ,
GSM564770 ,
GSM564771 ,
GSM564772 ,
GSM564773 ,
GSM564774 ,
GSM564775 ,
GSM564776 ,
GSM564777 ,
GSM564778 ,
GSM564779 ,
GSM564780 ,
GSM564781 ,
GSM564782 ,
GSM564783 ,
GSM564784 ,
GSM564785 ,
GSM564786 ,
GSM564787 ,
GSM564788 ,
GSM564789 ,
GSM564790 ,
GSM564791 ,
GSM564792 ,
GSM748780 ,
GSM748781 ,
GSM748782 ,
GSM748783 ,
GSM748784 ,
GSM748785 ,
GSM748790 ,
GSM748791 ,
GSM748792 ,
GSM748793 ,
GSM748794 ,
GSM748795 ,
GSM752032 ,
GSM752033 ,
GSM752034 ,
GSM752035 ,
GSM752036 ,
GSM752037 ,
GSM752299 ,
GSM752300 ,
GSM752301 ,
GSM752302 ,
GSM752303 ,
GSM752304 Series (12)
GSE21911 Transcriptional analysis of quorum sensing deficient in Yersinia pestis CO92 at 37°C
GSE22846 Transcriptional analysis of three quorum sensing signals add in experiment inYersinia pestis CO92 at 37°C
GSE22847 Transcriptional analysis of AHLs signals add in experiment inYersinia pestis CO92 at 37°C
GSE22848 Transcription analysis of AI-2 signal add in experiment in Yersinia pestis CO92 at 37°C
GSE22849 Transcriptional analysis of luxS-null strain in Yersinia pestis CO92 at 37°C
GSE22850 Outlier detection of biologically significant genes from combinatorial microarray data
GSE30237 Transcriptional analysis of AI-2 treatment in Yersinia pestis at 30°C
GSE30238 Transcriptional analysis of AHLs signal treatment at 30°C
GSE30333 Transcriptional analysis of temperature regulation in Yersinia pestis
GSE30341 Transcriptional analysis of ypeIR mutation in Yersinia pestis at 37°C
GSE30342 AI-2 quorum sensing in *Yersinia pestis*
GSE30373 Global gene expression analysis of *Yersinia pestis* AHL quorum sensing
Data table header descriptions ID IDENTIFIER GENE FUNCTION SEQUENCE Sequence of oligo
ORF Locus tag or gene symbol
SPOT_ID
Data table ID IDENTIFIER GENE FUNCTION SEQUENCE ORF SPOT_ID 1
YPO0222a
YPO0222a rpsN 3.A.2 228059 228364 30S ribosomal protein S14
CAAACTGGTCGTCCTCATGGTTTCCTGCGGAAGTTCGGGTTGAGCCGTATTAAAGTCCGTGAAACCGCTA
YPO0222a 2
YPO0228
YPO0228 rplO 3.A.2 230405 230839 50S ribosomal protein L15
TGAAAGTTATACTTTCAGGCGAAGTCAATCGTGCGGTAACTCTTCGTGGTCTGCGAGTCACCAAAGGCGC
YPO0228 3
YPO0245a
YPO0245a ----- 5.I 243738 244310 conserved hypothetical protein
CCGTTAGTGTCAACTAGCGCTAATTTAAGTGGGCATGAGCCGTGCCGCACGGAAGAAGAAGTCAGAATAC
YPO0245a 4
YPO0253
YPO0253 acs 1.A.1 250732 252690 acetyl-coenzyme A synthetase
ATGCGCCGTATTTTACGCAAAATTGCGACAGGAGATACCAGCAACTTGGGCGATACCTCAACACTTGCCG
YPO0253 5
YPO0269
YPO0269 ----- 4.A.6 269617 270537 type III secretion system apparatus protein
GGCCGTGGCAGTTTACTCCGGTGCGATGAAAAACTGGTGGTCAGAATTGCACAATGGGGATTACAAAACG
YPO0269 6
YPO0275
YPO0275 ----- 5.I 275051 275320 conserved hypothetical protein
ATTCTCCATCCGTAGAAACACCCCAACTGGCAGCGCCTATTGTGCCTGATTATCGCCTCGATATGGTGGG
YPO0275 7
YPO0293
YPO0293 ----- 5.I 294300 295361 conserved hypothetical protein
GCTTTGACCGTACCGATAATCGTGTTGTTCACCCAGATCTCTATCTGGCCGCTCTTGAGCGCACTGAAAA
YPO0293 8
YPO0299
YPO0299 terE 5.D 299787 300362 tellurium resistance protein
AAATTGCTCGCTTTGACCTATCCGAGGATGCCAGTACTGAAACCGCCATGATCTTTGGCGAGCTATACCG
YPO0299 9
YPO0623
YPO0623 ----- 5.I 684175 685407 putative aminotransferase
GCAAATCTTTGAGCGCCGCCGTAAGGTAGTGTTTGAGATGATGAATGCGATTCCTGGCGTATGCATGGTG
YPO0623 10
YPO0629
YPO0629 ----- 5.I 689361 689663 conserved hypothetical protein
GGTATTCCCCATGTAAATGGGAAGATATTTTTGGTAAACGAAGCCCTATCACAGCTCGATCGCGCGCCCA
YPO0629 11
YPO0649
YPO0649 bacA 4.H 706363 707181 putative bacitracin resistance protein
TGGCCGCAGAATGGTTGAAACCTAAAAATCCTAAGGCTGTCGGGCTGGATGATATTACCTACCGTCAGGC
YPO0649 12
YPO0655
YPO0655 asoB_ yjeH 4.A 715677 716927 putative permease
GTTGCCATCGCTTTTGGTCCGAAACTGGGTAAAGTCACGGGCTGGCTATTTTTATCGGTTATTCCGGTCG
YPO0655 13
YPO0673
YPO0673 sufI 4.C 734264 735688 putative cell division protein
TATGAACCGAGTAGATGTGCAGGCTCAGCAGGGGACATGGGAGCGTTGGATAATACATGCTGATATGCCA
YPO0673 14
YPO0680
YPO0680 ----- 3.C.1 742154 742816 putative DedA-family membrane protein
TACGTTTTCAGTTATTTAATTGGCTAAGCGGCCTGCTGTGGGTTGGCAGCGTCGTGGGTTTGGGTTTTGC
YPO0680 15
YPO0701
YPO0701 ----- 4.A 762990 764003 periplasmic binding protein
CGCTGGCCAATGTGCCAGACACGCTGAAGGACAACACCCATACAGAGCACCGTAAAGATATCATTCAGTT
YPO0701 16
YPO0708
YPO0708 fliQ 4.D 770790 771059 putative flagellar assembly protein
GATTAATGAACAAACGCTGAGCTTTTTACCGCGCCTGGTCATGACAATGTTGGTTCTCATCTTTGCGGGT
YPO0708 17
YPO1037
YPO1037 ----- 5.I 1178213 1178545 conserved hypothetical protein
GGCAAACCGTCCCACCGGAAGCAGAAGCTTTTGAGAGTAACGAGCCTTTTAGTATTGATACTATGGCGGC
YPO1037 18
YPO1043
YPO1043 ampM_ map_ b0168 3.A.8 1184138 1184929 methionine aminopeptidase
TTAAACCGGGGATCCGCCTGCGGACGCTGGGTAAAGCTATCCAGAAATTTGTTGAAGCAGAGAACTTCTC
YPO1043 19
YPO1061
YPO1061 ----- 5.I 1205517 1205915 conserved hypothetical protein
GCGCTAAAAGAACTTGTCGTCGCGGGCGTTGTTTGCGAAGCAGTTCGCATTGATCCCTACACTCAATCAC
YPO1061 20
YPO1066
YPO1066 ----- 5.I 1209358 1209774 conserved hypothetical protein
CGGGCGCAGGGCGCTGGAGGCCAGCATGTTAATAAAACCTCAACTGCGATTCATTTGCGCTTTGACATTA
YPO1066
14400 2155 Kbytes .Supplementary data files not provided
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