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Platform GPL13155 Query DataSets for GPL13155
Status Public on Feb 11, 2011
Title Agilent-020449 Mosquito Gene Expression Microarray (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Anopheles gambiae
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description A. gambiae (Mosquito) Oligo Microarray

Arrays of this design have barcodes that begin with 16020449 or 2520449.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Feb 11, 2011
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (16) GSM2390117, GSM2390118, GSM2390119, GSM2390120, GSM2390121, GSM2390122 
Series (1)
GSE89829 Anopheles coluzzii larval response to two purified Pseudomonas aeruginosa phenazine pigments 1-HP and Pyo.
Relations
Alternative to GPL13157

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID

Data table
ID COL ROW NAME CONTROL_TYPE GB_ACC UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner pos CONTROL
2 266 168 DarkCorner pos CONTROL
3 266 166 DarkCorner pos CONTROL
4 266 164 DarkCorner pos CONTROL
5 266 162 DarkCorner pos CONTROL
6 266 160 DarkCorner pos CONTROL
7 266 158 DarkCorner pos CONTROL
8 266 156 DarkCorner pos CONTROL
9 266 154 DarkCorner pos CONTROL
10 266 152 DarkCorner pos CONTROL
11 266 150 DarkCorner pos CONTROL
12 266 148 A_90_P106974 FALSE BX046289 Aga.7428 gb|BX046289 unmapped Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC2DE07 of strain 6-9 of Anopheles gambiae (African malaria mosquito). [BX046289] TTTCTCGCAGTTGGGTTGAAGTGAAATCTTACGTGGTTCGGAATATGAACCGAGTATCAT
13 266 146 A_90_P135026 FALSE BX627285 Aga.32848 AGAP006868-RA ens|AGAP006868-RA|ens|AGAP006868-RB|gb|BX627285|tc|TC118852 chr2L:38700074-38703527 cuticular protein 140, RR-2 family [Source:VB Community Annotation;Acc:CPR140] [AGAP006868-RA] GGATAGAGCACATTTAAAGAGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTT
14 266 144 A_90_P119424 FALSE BX070512 Aga.31108 AGAP012443-RA gb|BX070512|ens|AGAP012443-RA|gb|XM_001230904|tc|TC125550 chrU:25632246-25632305 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC7CE11 of strain 6-9 of Anopheles gambiae (African malaria mosquito). [BX070512] CACTGATTAATGTGTAAAATGAGCCCTTTTACGTGTTTATCGCCCGTGCGACGACTATTT
15 266 142 A_90_P127873 FALSE BM593125 Aga.34893 AGAP010723-RA ens|AGAP010723-RA|gb|BM593125|tc|TC118941 chr3L:7565364-7565423 17000687441311 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449702610 5'. [BM593125] GTGTTCAAGGGGGATCTGAACTATCGGAAACTGTTGGGAGATTTTAACTTCCCGTACAAT
16 266 140 A_90_P014259 FALSE BM584722 Aga.32421 AGAP002340-RA ens|AGAP002340-RA|gb|BM584722|tc|TC120564 chr2R:20284507-20284566 Eukaryotic translation initiation factor 3 subunit A (eIF3a)(Eukaryotic translation initiation factor 3 subunit 10) [Source:UniProtKB/Swiss-Prot;Acc:Q7PGE8] [AGAP002340-RA] AGCATCCATTGAGTAGTAATCAAGTGCAAACGAATGTAAAATGTCCCGATACGTGCAACG
17 266 138 A_90_P071943 FALSE tc|TC112239|tc|TC121179 chrX:2065977-2065918 Q7PRZ0_ANOGA (Q7PRZ0) ENSANGP00000019854 (Fragment), complete [TC112239] TCACGTCAGGTCTAAACGTAAACGTTTTAGAATTGGATGATGGTATAGCCGAAAGGACCC
18 266 136 A_90_P045866 FALSE AGAP009706-RA ens|AGAP009706-RA|tc|TC122239 chr3R:39906560-39906619 candidate odorant receptor [Source:VB Community Annotation;Acc:GPROR70] [AGAP009706-RA] GAAGACATTTTCGGGCTCATGTGTCTAGCTCAAGTCTCCATGGGAGTATTTACGATATGC
19 266 134 A_90_P131053 FALSE BM595461 Aga.30191 AGAP005622-RA ens|AGAP005622-RA|gb|BM595461|tc|TC114282 chr2L:17368825-17368884 17000687475650 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449717898 5'. [BM595461] AAACCAAACAGTGCTATTAGTGAGCGCTATTCGAAAACACTCTCCTCCACGATACTGAAC
20 266 132 A_90_P122936 FALSE AGAP003112-RA ens|AGAP003112-RA|tc|TC124566 chr2R:32509076-32509017 Q7QBL7_ANOGA (Q7QBL7) ENSANGP00000020494 (Fragment), partial (98%) [TC124566] CGTGCAATTTATTCGTGCAAAATTCGATACATTCAAAAGACCGCCTTTTCCCCTAGCAAG

Total number of rows: 45220

Table truncated, full table size 12021 Kbytes.




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