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Platform GPL13157 Query DataSets for GPL13157
Status Public on Feb 11, 2011
Title Agilent-020449 Mosquito Gene Expression Microarray (Probe name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Anopheles gambiae
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description A. gambiae (Mosquito) Oligo Microarray

Arrays of this design have barcodes that begin with 16020449 or 2520449.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Feb 11, 2011
Last update date Feb 11, 2011
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (20) GSM673303, GSM673304, GSM673305, GSM673306, GSM673307, GSM673308 
Series (3)
GSE27233 Regulation of Anopheles gambiae male accessory gland genes influences post-mating response in female
GSE32200 Effects of Plasmodium berghei infection on Anopheles gambiae during oocysts development
GSE150971 Swarming sample vs non-swarming sample
Relations
Alternative to GPL13155

Data table header descriptions
ID Agilent Probe name
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID

Data table
ID CONTROL_TYPE GB_ACC UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE SPOT_ID
A_90_P000003 FALSE AGAP000343-RA ens|AGAP000343-RA|tc|TC117748 chrX:5910551-5910610 "Q7QF78_ANOGA (Q7QF78) ENSANGP00000015591 (Fragment), complete [TC117748]" TGTTTGTTTATTTGTTTTGTTACGCTACCCTCCCTACCGTGCGTAGTTGTAGTGAAGTGT
A_90_P000011 FALSE BX014135 Aga.2454 gb|BX014135|gb|BX029379|gb|BX070736|gb|BX055638 chr3L:273489-273626 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA21AH03 of strain 6-9 of Anopheles gambiae (African malaria mosquito). [BX014135] TTACGGATGGTCGAAATCACTATCGTCGATAGAAGCTGCGATGATTGAAACCAAGCTAAC
A_90_P000013 FALSE BX066091 Aga.2454 gb|BX066091|gb|BX036202|gb|BX029379|gb|BX070736 chr3L:273364-273423 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC5BA11 of strain 6-9 of Anopheles gambiae (African malaria mosquito). [BX066091] ACTATCAACGCTATCCGTTACATGAGCCCTTACTCCACTATCAATGTCACTGTCATTGGA
A_90_P000015 FALSE BX029379 Aga.2454 gb|BX029379|gb|BX055638|gb|BX070736|gb|BX046310 chr3L:273509-273646 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA43DF03 of strain 6-9 of Anopheles gambiae (African malaria mosquito). [BX029379] TATCGTCGATAGAAGCTGCGATGATTGAAACCAAGCTAACCGAGACGCATGTAGAGTATG
A_90_P000020 FALSE AGAP002943-RA ens|AGAP002943-RA|tc|NP1268862 chr2R:29990393-29990543 GB AGTGCAAGATCGCGTACAGCTTGGAGTTTGTAAAAGAGAAAATTTTCGCCGACGAAGTAC
A_90_P000025 FALSE BX019716 Aga.27299 AGAP002609-RA gb|BX019716|gb|BX011922|gb|BX035258|ens|AGAP002609-RA chr2R:23848438-23848497 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA3AD03 of strain 6-9 of Anopheles gambiae (African malaria mosquito). [BX019716] CTCGTTTCTGGGCATTACGACCCCCAAGTACAGCTACGAGATTGAGGAATTTAAACGAAT
A_90_P000027 FALSE BX615787 Aga.38124 AGAP004236-RA ens|AGAP004236-RA|gb|BX615787 chr2R:54753441-54753584 "BX615787 Normalized Anopheles Head (NAH) Library Anopheles gambiae cDNA clone AGADA32TR, mRNA sequence [BX615787]" CGTTATATATCCAGGGCATGGTAACATCATAAATGATCCAGCCGAACGTGTGACGGAATA
A_90_P000032 FALSE AGAP004369-RA ens|AGAP004369-RA|tc|NP1270355 chr2R:57078726-57078667 GB TTGCGAGAGTTCTACCGTTACTCACCGGGACAGCAGCCGAGTAAAAAGATATTTCCTTTT
A_90_P000040 FALSE AGAP005132-RA ens|AGAP005132-RA|tc|TC110027 chr2L:9776000-9776059 "Q7PQ38_ANOGA (Q7PQ38) ENSANGP00000009975 (Fragment), complete [TC110027]" CGAGAGATTTTTAAATCCTAACGACGCAGCAATGCAAAGTTCATCACATCTTGCCGTAAT
A_90_P000041 FALSE XM_314428 Aga.6812 AGAP012429-RA ens|AGAP012429-RA|gb|XM_314428|tc|TC115051 chrU:33567949-33567890 "Anopheles gambiae str. PEST AGAP012429-PA (AgaP_AGAP012429) mRNA, complete cds [XM_314428]" CTTGAAAAAACGATGCAGATACATGGTATAAAGCCTCCACAGCCTAAACTAGGCTCAACG
A_90_P000043 FALSE XM_314428 Aga.6812 AGAP012429-RA ens|AGAP012429-RA|gb|XM_314428|tc|TC115051 chrU:33567889-33567830 "Anopheles gambiae str. PEST AGAP012429-PA (AgaP_AGAP012429) mRNA, complete cds [XM_314428]" AATAAAATAATTCGTATTGCTGGAACGACGGGAGCACGTGACCTGATTGATGACGGTTAC
A_90_P000046 FALSE AGAP008783-RA ens|AGAP008783-RA|tc|TC118307 chr3R:18150641-18150582 "Q7Q860_ANOGA (Q7Q860) ENSANGP00000012966 (Fragment), complete [TC118307]" ATATCGCCCAAGCTGAACATTAAAGATTACGGTGACATCCAGTATGAAGCGCTCAACTTC
A_90_P000051 FALSE AGAP005384-RA ens|AGAP005384-RA|tc|NP467045 chr2L:14271370-14271311 GB TTTTCAACGGCTGCTGAGATGGAGAAGTATTTTGAAGCTCCTTTAAAGCCTGCATTGTAC
A_90_P000058 FALSE AGAP006366-RA ens|AGAP006366-RA|ens|AGAP006366-RB|ens|AGAP006366-RC|ens|AGAP006366-RD chr2L:29946782-29946723 TTTAAACACGAAGGCAGGTAGTGTGTAGGGATTTGCGAAAGTGAAAGTGAACACAAAACC
A_90_P000062 FALSE AGAP006696-RA ens|AGAP006696-RA chr2L:36212876-36212817 CATGATAGAGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAAAGTGCAGCTGGAC
A_90_P000066 FALSE AGAP008297-RA ens|AGAP008297-RA chr3R:8639951-8640010 GCGTCGGGGGTGATGATGACGGCTCGCTTTAATTTATCATGAATTACACATGAAATACAT
A_90_P000067 FALSE AGAP008297-RA ens|AGAP008297-RA|tc|TC111864 chr3R:8639888-8639947 "Q7Q495_ANOGA (Q7Q495) ENSANGP00000018304 (Fragment), complete [TC111864]" GCAGTTTCAAGGACCTGAACATTGGCACGAGCTTCATCTACGTTATCAATTGATGGTAAA
A_90_P000068 FALSE AGAP008297-RA ens|AGAP008297-RA|tc|TC111864 chr3R:8639883-8639942 "Q7Q495_ANOGA (Q7Q495) ENSANGP00000018304 (Fragment), complete [TC111864]" CAATGGCAGTTTCAAGGACCTGAACATTGGCACGAGCTTCATCTACGTTATCAATTGATG
A_90_P000069 FALSE AGAP008297-RA ens|AGAP008297-RA chr3R:8639954-8640013 TCGGGGGTGATGATGACGGCTCGCTTTAATTTATCATGAATTACACATGAAATACATGCA
A_90_P000070 FALSE AGAP008297-RA ens|AGAP008297-RA|tc|TC111864 chr3R:8639892-8639951 "Q7Q495_ANOGA (Q7Q495) ENSANGP00000018304 (Fragment), complete [TC111864]" TTTCAAGGACCTGAACATTGGCACGAGCTTCATCTACGTTATCAATTGATGGTAAATCGG

Total number of rows: 43663

Table truncated, full table size 11392 Kbytes.




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