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| Status |
Public on Feb 23, 2011 |
| Title |
Agilent-020573 Bifidobacterium breve UCC2003 Agilent 4x44k format |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Bifidobacterium breve UCC2003 |
| Manufacturer |
Agilent |
| Manufacture protocol |
Chemical In-situ oligonucleotide synthesis.
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| Support |
glass |
| Coating |
unknown |
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| Description |
Custom 4x44k microarray design of B. breve UCC2003 with three unique probes replicated 5 times per 1 kb of gene sequence.
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| Contributor(s) |
Zomer A, van Sinderen D |
| Submission date |
Feb 21, 2011 |
| Last update date |
Jul 22, 2016 |
| Contact name |
Aldert Zomer |
| E-mail(s) |
A.L.Zomer@uu.nl
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| Organization name |
Utrecht University
|
| Department |
Department of Infectious Diseases and Immunology,Faculty of Veterinary Medicine
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| Street address |
Yalelaan 1
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| City |
Utrecht |
| ZIP/Postal code |
3584 cl |
| Country |
Netherlands |
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| Samples (96)
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GSM678559, GSM679413, GSM679414, GSM2248063, GSM2248064, GSM2248065
GSM2248066, GSM2248067, GSM2248068, GSM2248069, GSM2248070, GSM2248071, GSM2248072, GSM2436963, GSM2436964, GSM2810120, GSM2810121, GSM2810122, GSM2810123, GSM2810124, GSM2810125, GSM2810126, GSM2810127, GSM2810128, GSM2810129, GSM2810130, GSM2810131, GSM2810132, GSM2810133, GSM2810134, GSM2810135, GSM2810136, GSM2810137, GSM2810138, GSM2810139, GSM2810140, GSM2810141, GSM2810142, GSM2810143, GSM2810144, GSM2810145, GSM2810146, GSM2810147, GSM2810148, GSM2810149, GSM2810150, GSM2810151, GSM2810152, GSM2810153, GSM2810154, GSM2810155, GSM2810156, GSM2810157, GSM2810158, GSM2810159, GSM2810160, GSM2810161, GSM2810162, GSM2810163, GSM2810164, GSM2810165, GSM2810166, GSM2810167, GSM2810168, GSM2810169, GSM2810170, GSM2810171, GSM2810172, GSM2810173, GSM2810174, GSM2810175, GSM2810176, GSM2810177, GSM2810178, GSM2810179, GSM2810180, GSM2810181, GSM2810182, GSM2810183, GSM2810184, GSM2916419, GSM2916420, GSM2916421, GSM2916422, GSM2916423, GSM2916424, GSM2916425, GSM2916426, GSM2916427, GSM2916428, GSM2916429, GSM2916430, GSM2977340, GSM2977341, GSM2977342, GSM2977343
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| Series (7)
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| GSE27491 |
Functional genome analysis of Bifidobacterium breve UCC2003 reveals a major conserved host-colonization factor |
| GSE84710 |
Bifidobacterium breve UCC2003 metabolizes lacto-N-tetraose and lacto-N-neo-tetraose through overlapping, yet distinct pathways |
| GSE92758 |
Identification of genetic loci involved in iron metabolism by Bifidobacterium breve UCC2003 |
| GSE104927 |
Pan-genome and methylome analysis reveals the diversity of restriction/modification systems in the gut commensal Bifidobacterium breve. |
| GSE108949 |
Global control of carbon flux in Bifidobacterium breve UCC2003 |
| GSE108950 |
MalR regulon of B. breve UCC2003; malto-oligosachrides and beyond |
| GSE110080 |
Iron starvation in Bifidobacterium breve UCC2003 increases bile resistance through enhanced expression of a bile salt hydrolase |
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| Data table header descriptions |
| ID |
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| ProbeName |
Name of the probe |
| SEQUENCE |
Sequence of the probe |
| ORF |
Locus tag |
| SPOT_ID |
Description of probe sequence |
| Data table |
| ID |
ProbeName |
SEQUENCE |
ORF |
SPOT_ID |
| 1 |
GE_BrightCorner |
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GE_BrightCorner |
| 2 |
DarkCorner |
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DarkCorner |
| 3 |
DarkCorner |
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DarkCorner |
| 4 |
DarkCorner |
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DarkCorner |
| 5 |
DarkCorner |
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DarkCorner |
| 6 |
DarkCorner |
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|
DarkCorner |
| 7 |
DarkCorner |
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DarkCorner |
| 8 |
DarkCorner |
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DarkCorner |
| 9 |
DarkCorner |
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DarkCorner |
| 10 |
DarkCorner |
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DarkCorner |
| 11 |
DarkCorner |
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DarkCorner |
| 12 |
CUST_7408_PI390659822 |
CGATTTTCGAGATAATCTTGCTCGGCTGGAATCGCAGAATGTTGTGGTGCTAGGTGTGTC |
Bbr_0947 |
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| 13 |
CUST_1664_PI390659822 |
CTTTTGTGTCCACCGTGTCCGAGGTGCTTACCGAAGTCATCAACACGGTCGGAGACAAAG |
Bbr_0230 |
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| 14 |
CUST_7047_PI390659822 |
CTGTATACCTGTCGTTTCATGCTGGTCATCATTTTGGGCACGGTGTTTTTGACCACGACC |
Bbr_1329 |
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| 15 |
CUST_919_PI390659822 |
CAAAACCACTACCAGTTCCATGCTTGCGCACATTTTGGTGCATACCGGAGCTGATCCCAG |
Bbr_1256 |
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| 16 |
CUST_3945_PI390659822 |
GATGACCATCATGACCTCGTACAACGAAATCAACGGCGTCTACGCGCATGAGAACAAGCA |
Bbr_1903 |
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| 17 |
CUST_1519_PI390659822 |
CTCAAGGGCAAATTCGGATTGTCTGACAAGGCTTCCATGGAAATCATGAAGCTGTTCTTC |
Bbr_1293 |
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| 18 |
CUST_6186_PI390659822 |
GATTCCGACCACGTCACTCGAGCCGCAGCTGCAATACCTGACGCAGAACAATTTCTATTA |
Bbr_1732 |
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| 19 |
CUST_7013_PI390659822 |
CCCTTACGTCGCGGCTACGATGACAAGCACATGTACGTCCATGGTCTACATTTGAGATAG |
Bbr_0352 |
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| 20 |
CUST_4631_PI390659822 |
CCGAGGATACGAATTACGAGATTGTGGCATTAAAAGGCATCGCCGTGTATTTCGTCATGG |
Bbr_0545 |
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Total number of rows: 45220
Table truncated, full table size 4261 Kbytes.
| Supplementary data files not provided |
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