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Platform GPL15189 Query DataSets for GPL15189
Status Public on Feb 03, 2012
Title Agilent-021322 Horse Gene Expression Microarray [Feature Number version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Equus caballus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description E. caballus (Horse) Oligo Microarray

Arrays of this design have barcodes that begin with 16021322 or 2521322.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Feb 03, 2012
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (85) GSM954551, GSM954552, GSM954553, GSM954554, GSM954555, GSM954556 
Series (8)
GSE39043 Global gene expression changes during the estrous cycle in equine endometrium
GSE52109 Transcriptome profiling of dominant follicle development in the equine ovary
GSE73730 Expression data from differentiating primary culture of equine satellite cells (ESC) incubated with gamma-oryzanol (GO)
Relations
Alternative to GPL15190

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBank Accession number
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 A_69_P091927 A_69_P091927 FALSE 100057058 DIAPH2 diaphanous homolog 2 (Drosophila) ENSECAT00000012332 ens|ENSECAT00000012332 chrUn:113182374-113182433 AAGGGCTAATCCAAGATCAGCTACATAACTGGGCTGAGTCCTGTTCTAAACAAGATTGGG
13 266 146 A_69_P083486 A_69_P083486 FALSE XM_001488980 XM_001488980 ENSECAT00000023127 ens|ENSECAT00000023127|ref|XM_001488980 chr3:35002552-35003017 ameloblastin (enamel matrix protein) [Source:HGNC Symbol;Acc:452] [ENSECAT00000023127] TATGGAGCAAATCAATTGAACACTCCTGGCAGACTTGGCATCATGAGCTCAGAGGAAATG
14 266 144 A_69_P107141 A_69_P107141 FALSE XM_001493305 100061309 LOC100061309 SLAIN motif-containing protein 2-like Eca.5644 ENSECAT00000025177 ens|ENSECAT00000025177|gb|XM_001493305 chr3:73964230-73964171 PREDICTED: Equus caballus similar to SLAIN motif family, member 2 (LOC100061309), mRNA [XM_001493305] TGTGCACAAGAAAATGGTGAATTCAAGCTATCCAAAACTTCACGTTCAACCTAATTTACT
15 266 142 A_69_P115916 A_69_P115916 FALSE XM_001916933 100066570 LOC100066570 uncharacterized LOC100066570 Eca.2113 gb|XM_001916933 chr7:1629420-1629764 PREDICTED: Equus caballus similar to trafficking protein particle complex 5 (LOC100066570), mRNA [XM_001916933] CCAGCACGTGAATGACAATCTGAAGGACCTGTCAAAAGATGTAAGTAACATCATGACGAA
16 266 140 A_69_P059676 A_69_P059676 FALSE XM_001498882 XM_001498882 100053341 LOC100053341 v-type proton ATPase subunit E 2-like ENSECAT00000014253 ens|ENSECAT00000014253|ref|XM_001498882 chr15:49036536-49036595 PREDICTED: Equus caballus v-type proton ATPase subunit E 2-like (LOC100053341), mRNA [XM_001498882] AAGATGCCGGAAATACGAAAGGCCTTGTTTGGAGCCAACGCCAACAGGAAGTTTTTTATC
17 266 138 A_69_P085961 A_69_P085961 FALSE XM_001503545 XM_001503545 100054471 LOC100054471 probable U3 small nucleolar RNA-associated protein 11-like ENSECAT00000023081 ens|ENSECAT00000023081|ref|XM_001503545 chr2:18104182-18104123 PREDICTED: Equus caballus probable U3 small nucleolar RNA-associated protein 11-like (LOC100054471), mRNA [XM_001503545] AAGAAAGAAACAGTGAACTCCCCAGCAATTTACAAATTTCAGAGTCGTCGAAAACGTTGA
18 266 136 A_69_P104311 A_69_P104311 FALSE CD536246 Eca.2969 gb|CD536246 chr16:63542925-63542984 LeukoN6_4_G09.b1_A028 Unstimulated peripheral blood leukocytes N6 Equus caballus cDNA clone LeukoN6_4_G09_A028 3', mRNA sequence [CD536246] CACAATTTTCTTTATGCAGAAACGTTCTGATTAGGAGTGGATATTGACTGTAACTACACA
19 266 134 A_69_P088701 A_69_P088701 FALSE 100067185 MFAP3L microfibrillar-associated protein 3-like ENSECAT00000002264 ens|ENSECAT00000002264 chr2:51096313-51096374 CAAAAAGCTATGCATATCAAGAAAATCAGGGGCTGCTCCTTGTAGTACCGATGTAGTACG
20 266 132 A_69_P124086 A_69_P124086 FALSE XM_001490193 XM_001490193 100056446 LOC100056446 zinc finger protein 37A-like ref|XM_001490193 chr1:69056926-69056985 PREDICTED: Equus caballus zinc finger protein 37A-like (LOC100056446), mRNA [XM_001490193] GAGAACACATTTGGAGAGAAACTCTGTAAATGTAATAAATGAAGGAAATCATTCTGGGTG

Total number of rows: 45220

Table truncated, full table size 13974 Kbytes.




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