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Platform GPL15190 Query DataSets for GPL15190
Status Public on Feb 03, 2012
Title Agilent-021322 Horse Gene Expression Microarray [Probe Name version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Equus caballus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description E. caballus (Horse) Oligo Microarray

Arrays of this design have barcodes that begin with 16021322 or 2521322.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Probe Name.
 
Submission date Feb 03, 2012
Last update date Dec 23, 2015
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (66) GSM874363, GSM874364, GSM874365, GSM874366, GSM874367, GSM874368 
Series (5)
GSE35742 Gene expression variation in horse placental tissue, and resting and stimulated horse lymphocytes [Agilent-021322]
GSE35743 Gene expression variation in horse placental and fetal tissue, and resting and stimulated horse lymphocytes
GSE72645 Gene expression variation in mediastinal (pulmonary-draining) lymph nodes of heaves-affected horses versus controls
Relations
Alternative to GPL15189

Data table header descriptions
ID
SPOT_ID
CONTROL_TYPE
REFSEQ RefSeqAccession
GB_ACC GenBank Accession number
LOCUSLINK_ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
GE_BrightCorner GE_BrightCorner pos
DarkCorner DarkCorner pos
A_69_P091927 A_69_P091927 FALSE 100057058 DIAPH2 diaphanous homolog 2 (Drosophila) ENSECAT00000012332 ens|ENSECAT00000012332 chrUn:113182374-113182433 AAGGGCTAATCCAAGATCAGCTACATAACTGGGCTGAGTCCTGTTCTAAACAAGATTGGG
A_69_P083486 A_69_P083486 FALSE XM_001488980 XM_001488980 ENSECAT00000023127 ens|ENSECAT00000023127|ref|XM_001488980 chr3:35002552-35003017 ameloblastin (enamel matrix protein) [Source:HGNC Symbol;Acc:452] [ENSECAT00000023127] TATGGAGCAAATCAATTGAACACTCCTGGCAGACTTGGCATCATGAGCTCAGAGGAAATG
A_69_P107141 A_69_P107141 FALSE XM_001493305 100061309 LOC100061309 SLAIN motif-containing protein 2-like Eca.5644 ENSECAT00000025177 ens|ENSECAT00000025177|gb|XM_001493305 chr3:73964230-73964171 PREDICTED: Equus caballus similar to SLAIN motif family, member 2 (LOC100061309), mRNA [XM_001493305] TGTGCACAAGAAAATGGTGAATTCAAGCTATCCAAAACTTCACGTTCAACCTAATTTACT
A_69_P115916 A_69_P115916 FALSE XM_001916933 100066570 LOC100066570 uncharacterized LOC100066570 Eca.2113 gb|XM_001916933 chr7:1629420-1629764 PREDICTED: Equus caballus similar to trafficking protein particle complex 5 (LOC100066570), mRNA [XM_001916933] CCAGCACGTGAATGACAATCTGAAGGACCTGTCAAAAGATGTAAGTAACATCATGACGAA
A_69_P059676 A_69_P059676 FALSE XM_001498882 XM_001498882 100053341 LOC100053341 v-type proton ATPase subunit E 2-like ENSECAT00000014253 ens|ENSECAT00000014253|ref|XM_001498882 chr15:49036536-49036595 PREDICTED: Equus caballus v-type proton ATPase subunit E 2-like (LOC100053341), mRNA [XM_001498882] AAGATGCCGGAAATACGAAAGGCCTTGTTTGGAGCCAACGCCAACAGGAAGTTTTTTATC
A_69_P085961 A_69_P085961 FALSE XM_001503545 XM_001503545 100054471 LOC100054471 probable U3 small nucleolar RNA-associated protein 11-like ENSECAT00000023081 ens|ENSECAT00000023081|ref|XM_001503545 chr2:18104182-18104123 PREDICTED: Equus caballus probable U3 small nucleolar RNA-associated protein 11-like (LOC100054471), mRNA [XM_001503545] AAGAAAGAAACAGTGAACTCCCCAGCAATTTACAAATTTCAGAGTCGTCGAAAACGTTGA
A_69_P104311 A_69_P104311 FALSE CD536246 Eca.2969 gb|CD536246 chr16:63542925-63542984 LeukoN6_4_G09.b1_A028 Unstimulated peripheral blood leukocytes N6 Equus caballus cDNA clone LeukoN6_4_G09_A028 3', mRNA sequence [CD536246] CACAATTTTCTTTATGCAGAAACGTTCTGATTAGGAGTGGATATTGACTGTAACTACACA
A_69_P088701 A_69_P088701 FALSE 100067185 MFAP3L microfibrillar-associated protein 3-like ENSECAT00000002264 ens|ENSECAT00000002264 chr2:51096313-51096374 CAAAAAGCTATGCATATCAAGAAAATCAGGGGCTGCTCCTTGTAGTACCGATGTAGTACG
A_69_P124086 A_69_P124086 FALSE XM_001490193 XM_001490193 100056446 LOC100056446 zinc finger protein 37A-like ref|XM_001490193 chr1:69056926-69056985 PREDICTED: Equus caballus zinc finger protein 37A-like (LOC100056446), mRNA [XM_001490193] GAGAACACATTTGGAGAGAAACTCTGTAAATGTAATAAATGAAGGAAATCATTCTGGGTG
A_69_P004878 A_69_P004878 FALSE NM_001163856 NM_001163856 100033897 GAPDH glyceraldehyde-3-phosphate dehydrogenase Eca.487 ENSECAT00000023721 ref|NM_001163856|ens|ENSECAT00000023721|gb|AF083897|gb|AF157626 chr6:34317634-34317799 Equus caballus glyceraldehyde-3-phosphate dehydrogenase (GAPDH), mRNA [NM_001163856] GCTGGCATTGCCCTCAACGACCACTTTGTCAAGCTCATTTCCTGGTATGACAATGAATTT
A_69_P129249 A_69_P129249 FALSE XM_003365487 XM_003365487 100630784 LOC100630784 uncharacterized protein C5orf52 homolog ref|XM_003365487 chr8:6060232-6060173 PREDICTED: Equus caballus uncharacterized protein C5orf52 homolog (LOC100630784), mRNA [XM_003365487] AGTACCTGGATAGCATCCGATTGCATCCGTTCCAGTTGAAATTCCATCCTGAAGAGAAAA
A_69_P118016 A_69_P118016 FALSE XM_001498931 XM_001498931 100053686 LOC100053686 keratin-associated protein 4-7-like ref|XM_001498931|ref|XM_001917957|ref|XM_001917945|ref|XM_001499075 chr11:20345338-20345397 PREDICTED: Equus caballus keratin-associated protein 4-7-like (LOC100053686), mRNA [XM_001498931] AGTGCTGCATCTCCAGCTGCTGCCAGCCCTCTTGCTCCAATTCTAGCTGCTGCGGCTCCA
A_69_P028825 A_69_P028825 FALSE XM_001499068 XM_001499068 100053208 LOC100053208 prostaglandin E2 receptor EP4 subtype-like ENSECAT00000011519 ens|ENSECAT00000011519|ref|XM_001499068 chr21:21231416-21231357 PREDICTED: Equus caballus prostaglandin E2 receptor EP4 subtype-like (LOC100053208), mRNA [XM_001499068] GGGGAGCTCTCTGCAAGTGACATTTCCCAATGAAACACTGAACTTATCAGAAAAATGTAT
A_69_P002796 A_69_P002796 FALSE XM_001490301 XM_001490301 100056641 LOC100056641 rhodopsin-like ENSECAT00000014378 ens|ENSECAT00000014378|ref|XM_001490301 chr16:4377270-4377211 Gamma-aminobutyric acid receptor subunit rho1 Fragment [Source:UniProtKB/TrEMBL;Acc:Q95M85] [ENSECAT00000014378] GGTCAACAATGAATCCTTCGTCATCTATATGTTCGTGGTCCACTTCACCATCCCCTTGAT
A_69_P033566 A_69_P033566 FALSE XM_001501693 XM_001501693 100069089 GPR179 G protein-coupled receptor 179 ENSECAT00000023280 ens|ENSECAT00000023280|ref|XM_001501693 chr11:22457075-22457134 PREDICTED: Equus caballus G protein-coupled receptor 179 (GPR179), mRNA [XM_001501693] ATCTGGAGGGACTGAAGAACTCTATTCAAAAGAAGCAGCCAAAGTCAGCAGAGAGCAAGA
A_69_P082871 A_69_P082871 FALSE XM_001497219 XM_001497219 100053412 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 ENSECAT00000012326 ens|ENSECAT00000012326|ref|XM_001497219 chr3:54992306-54992365 PREDICTED: Equus caballus SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, transcript variant 2 (SMARCAD1), mRNA [XM_001497219] CTCCAATGCAGTGTGGGTGACAAAGTGAAATTTAGAAGTAAAGTTGTCTACTTGATATTT
A_69_P079567 A_69_P079567 FALSE XM_001502043 XM_001502043 100056173 LOC100056173 tetraspanin-12-like ENSECAT00000002388 ens|ENSECAT00000002388|ref|XM_001502043 chr4:76680471-76680412 PREDICTED: Equus caballus tetraspanin-12-like (LOC100056173), mRNA [XM_001502043] TTGAAGAACGACACCACTCAGCACTTGTCATGTCACTCAGTAGAACTGTTGAAACCAAGC
A_69_P055262 A_69_P055262 FALSE XM_001498804 XM_001498804 100053538 LOC100053538 protein FAM19A1-like ENSECAT00000024836 ens|ENSECAT00000024836|ref|XM_001498804 chr16:21295333-21295274 PREDICTED: Equus caballus protein FAM19A1-like (LOC100053538), mRNA [XM_001498804] TGGTTACCAGATAATCACAGTACTTTTACTGCGTGTCACGAAGTATCCTACAGTGAGAAG

Total number of rows: 43663

Table truncated, full table size 13295 Kbytes.




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