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Status
Public on Jan 31, 2017
Title
[AraGene-1_0-st] Arabidopsis Gene 1.0 ST Array [CDF: aragene10st_At_TAIRG version 20]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Arabidopsis thaliana Manufacturer
Affymetrix
Manufacture protocol
This is identical to GPL17416 but a custom CDF environment was used to extract data [Brainarray Version 20, aragene10st ]. CDF and other files can be downloaded at: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/20.0.0/tairg.asp
Web link
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/20.0.0/tairg.asp Submission date
Jan 31, 2017
Last update date
Feb 01, 2017
Contact name
GEO admin
E-mail(s)
geo@ncbi.nlm.nih.gov Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (56)
GSM2473178 , GSM2473179 , GSM2473180 , GSM2473181 , GSM2473182 , GSM2473183
GSM2473184 ,
GSM2473185 ,
GSM2473186 ,
GSM2473187 ,
GSM2473188 ,
GSM2473189 ,
GSM2473190 ,
GSM2473191 ,
GSM2473192 ,
GSM2473193 ,
GSM2473194 ,
GSM2473195 ,
GSM2473196 ,
GSM2473197 ,
GSM2473198 ,
GSM2473199 ,
GSM2473200 ,
GSM2473201 ,
GSM2473202 ,
GSM2473203 ,
GSM2473204 ,
GSM2473205 ,
GSM2473206 ,
GSM2473207 ,
GSM2473208 ,
GSM2473209 ,
GSM2473210 ,
GSM2473211 ,
GSM2473212 ,
GSM2473213 ,
GSM2473214 ,
GSM2473215 ,
GSM2473216 ,
GSM2473217 ,
GSM4803361 ,
GSM4803362 ,
GSM4803363 ,
GSM4803364 ,
GSM4803365 ,
GSM4803366 ,
GSM4803367 ,
GSM4803368 ,
GSM4803369 ,
GSM4803370 ,
GSM4803371 ,
GSM4803372 ,
GSM4803373 ,
GSM4803374 ,
GSM4803375 ,
GSM4803376 Series (2)
GSE94327 The redox-sensitive regulatory module of cyclophilin 20-3, 2-cysteine peroxiredoxin and cysteine synthase in the high light acclimation response in Arabidopsis thaliana
GSE158586 Expression data from Arabidopsis thaliana depleted of HYPK or NAA10
Relations Alternative to
GPL17416 (alternative CDF [official])
Data table header descriptions ID Probe Set Name
ORF Locus tag; TAIR ID
GeneSymbol Description Full Gene Name
Data table ID ORF GeneSymbol Description AT1G01010_at
AT1G01010 ANAC001, NAC001
NAC domain containing protein 1
AT1G01020_at
AT1G01020 ARV1
Arv1-like protein
AT1G01030_at
AT1G01030 NGA3
AP2/B3-like transcriptional factor family protein
AT1G01040_at
AT1G01040 DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1
dicer-like 1
AT1G01046_at
AT1G01046 MIR838A
MIR838a; miRNA
AT1G01050_at
AT1G01050 AtPPa1, PPa1
pyrophosphorylase 1
AT1G01060_at
AT1G01060 LHY
Homeodomain-like superfamily protein
AT1G01070_at
AT1G01070 nodulin MtN21 /EamA-like transporter family protein
AT1G01073_at
AT1G01073 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
AT1G01080_at
AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein
AT1G01090_at
AT1G01090 PDH-E1 ALPHA
pyruvate dehydrogenase E1 alpha
AT1G01100_at
AT1G01100 60S acidic ribosomal protein family
AT1G01110_at
AT1G01110 IQD18
IQ-domain 18
AT1G01115_at
AT1G01115 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
AT1G01120_at
AT1G01120 KCS1
3-ketoacyl-CoA synthase 1
AT1G01130_at
AT1G01130 CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 176 Blast hits to 176 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
AT1G01140_at
AT1G01140 CIPK9, PKS6
CBL-interacting protein kinase 9
AT1G01150_at
AT1G01150 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
AT1G01160_at
AT1G01160 GIF2
GRF1-interacting factor 2
AT1G01170_at
AT1G01170 Protein of unknown function (DUF1138)
27826 2844 Kbytes .Supplementary file Size Download File type/resource GPL23011_aragene10st_At_TAIRG.cdf.gz
9.3 Mb
(ftp) (http) CDF
GPL23011_aragene10st_At_TAIRG.cdf.txt.gz
3.6 Mb
(ftp) (http) TXT
GPL23011_aragene10st_At_TAIRG_desc.txt.gz
888.2 Kb
(ftp) (http) TXT
GPL23011_aragene10st_At_TAIRG_mapping.txt.gz
4.4 Mb
(ftp) (http) TXT
GPL23011_aragene10st_At_TAIRG_probe_tab.txt.gz
8.2 Mb
(ftp) (http) TXT
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