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Platform GPL18544 Query DataSets for GPL18544
Status Public on Apr 08, 2014
Title Illumina HumanExome-12 v1.0 BeadChip
Technology type oligonucleotide beads
Distribution commercial
Organism Homo sapiens
Manufacturer Illumina Inc.
Manufacture protocol see manufacturer's website
 
Description HumanExome-12v1_A
coverage of putative functional exonic variants selected from over 12,000 individual exome and whole-genome sequences

The exonic content consists of > 250,000 markers representing diverse populations—including European, African, Chinese, and Hispanic individuals—and a range of common conditions, such as type 2 diabetes, cancer, metabolic, and psychiatric disorders.

HumanExome BeadChips deliver focused coverage of exonic regions, but do not include coverage outside of coding regions. Researchers can use these arrays to obtain new insights from previously genotyped cohorts, or run new studies focused on identifying functionally relevant associations.
 
Submission date Apr 08, 2014
Last update date Apr 08, 2014
Organization Illumina Inc.
E-mail(s) expression@illumina.com, techsupport@illumina.com
Phone 1 800 809 4566
URL http://www.illumina.com
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Samples (72) GSM1366824, GSM1366825, GSM1366826, GSM1366827, GSM1366828, GSM1366829 
Series (6)
GSE56685 Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta (SNP genotyping)
GSE56781 Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta
GSE67773 SNP-array profiling of 21 novel primary and metastatic colorectal cancer cell lines [Illumina HumanExome-12 v1.0 BeadChip]

Data table header descriptions
ID
Name
IlmnStrand
SNP
AddressA_ID
SPOT_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SourceSeq
TopGenomicSeq
BeadSetID
Exp_Clusters
RefStrand

Data table
ID Name IlmnStrand SNP AddressA_ID SPOT_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SourceSeq TopGenomicSeq BeadSetID Exp_Clusters RefStrand
exm-IND1-200449980-0_M_R_1990486447 exm-IND1-200449980 MINUS [D/I] 91721246 exm-IND1-200449980 CTGTGGAACTTTCCGGAGCTCGGCACCCTTCCCCCAAGCCTACCTGGGCG 37.1 1 202183358 diploid Homo sapiens 1000genomes 0 PLUS GAGGGCCGCTCAGCGAGGGCGGGACAGAACCTCTCCCGGGCTGGGAGTGCACGGCGCGGT[-/G]CGCCCAGGTAGGCTTGGGGGAAGGGTGCCGAGCTCCGGAAAGTTCCACAGGTCCTCCGCA GAGGGCCGCTCAGCGAGGGCGGGACAGAACCTCTCCCGGGCTGGGAGTGCACGGCGCGGT[-/G]CGCCCAGGTAGGCTTGGGGGAAGGGTGCCGAGCTCCGGAAAGTTCCACAGGTCCTCCGCA 621 3 -
exm-IND1-201453487-0_M_R_1990486448 exm-IND1-201453487 MINUS [D/I] 40777952 exm-IND1-201453487 TCCTGCAACCAGGGCCGATACCCCCTCATCCAGACGCTACGGCAGGAACT 37.1 1 203186865 diploid Homo sapiens 1000genomes 0 PLUS CATGGAGCTGTGTTTGTACCCCACCTCCAAATTCCACCACTGGCCCTGGGCCCCTTACTT[-/ACTC]AGTTCCTGCCGTAGCGTCTGGATGAGGGGGTATCGGCCCTGGTTGCAGGAGAAGCCGGCA CATGGAGCTGTGTTTGTACCCCACCTCCAAATTCCACCACTGGCCCTGGGCCCCTTACTT[-/ACTC]AGTTCCTGCCGTAGCGTCTGGATGAGGGGGTATCGGCCCTGGTTGCAGGAGAAGCCGGCA 621 3 -
exm-IND1-85310248-0_P_F_1990486624 exm-IND1-85310248 PLUS [I/D] 9776533 exm-IND1-85310248 TCAGAACCATGGCTCCAAAACAAAAGAAAAAGACATCACGTGGCAAAAAA 37.1 1 85537661 diploid Homo sapiens 1000genomes 0 PLUS CTTTATGCAGCCCAAGTCAGAACCATGGCTCCAAAACAAAAGAAAAAGACATCACGTGGC[-/A]AAAAAAGACTAAAACCAGTATTAGCTGGTAGGAATATTTCTTCATTGAATGGGATTTTTT CTTTATGCAGCCCAAGTCAGAACCATGGCTCCAAAACAAAAGAAAAAGACATCACGTGGC[-/A]AAAAAAGACTAAAACCAGTATTAGCTGGTAGGAATATTTCTTCATTGAATGGGATTTTTT 621 3 +
exm-IND10-102817747-0_P_F_1990486569 exm-IND10-102817747 PLUS [I/D] 86738218 exm-IND10-102817747 CTCTGCAAGTTTTGTGCCTTAGCGGAAAGAGGCGACATCTCTGGCAAGTT 37.1 10 102827758 diploid Homo sapiens 1000genomes 0 PLUS GGGAACACCTGGCTCTGCAAGTTTTGTGCCTTAGCGGAAAGAGGCGACATCTCTGGCAAG[-/T]TTGGGAGTACAGGAAGTAGCGAAGGAGTGCCATCTGGTGGATCCTTCTGGTAGTGACACT GGGAACACCTGGCTCTGCAAGTTTTGTGCCTTAGCGGAAAGAGGCGACATCTCTGGCAAG[-/T]TTGGGAGTACAGGAAGTAGCGAAGGAGTGCCATCTGGTGGATCCTTCTGGTAGTGACACT 621 3 +
exm-IND10-18329639-0_M_R_1990486442 exm-IND10-18329639 MINUS [D/I] 71737939 exm-IND10-18329639 AAGGCTGCTCCTATGGCTAGGCCATCTGCAAAATTATGCAGGCTGTCCCC 37.1 10 18289634 diploid Homo sapiens 1000genomes 0 PLUS CTGTGTTTATTTGGTTCCTTAGGTAAAGCCATTAGCTTGTTAGCAATCATGATTCTGGTT[-/G]GGGGACAGCCTGCATAATTTTGCAGATGGCCTAGCCATAGGAGCAGCCTTCTCATCATCA CTGTGTTTATTTGGTTCCTTAGGTAAAGCCATTAGCTTGTTAGCAATCATGATTCTGGTT[-/G]GGGGACAGCCTGCATAATTTTGCAGATGGCCTAGCCATAGGAGCAGCCTTCTCATCATCA 621 3 -
exm-IND10-27476467-0_M_R_1990486443 exm-IND10-27476467 MINUS [D/I] 82710322 exm-IND10-27476467 ATGGAGCCAGCAAAAAGGATGAAGAAGAGCTTGGACACAACCGATAACTG 37.1 10 27436462 diploid Homo sapiens 1000genomes 0 PLUS GCATTTGGAGAAACCCGCAGTGTACAGGGATTGAGAGGGAGAAGGGTTCTGGACGGAtgT[-/GC]cagttatcggttgtgtccaagctcttcttcatcctttttgctggctccatgaacatggat GCATTTGGAGAAACCCGCAGTGTACAGGGATTGAGAGGGAGAAGGGTTCTGGACGGAtgT[-/GC]cagttatcggttgtgtccaagctcttcttcatcctttttgctggctccatgaacatggat 621 3 -
exm-IND10-27727540-0_M_R_1990486444 exm-IND10-27727540 MINUS [I/D] 6700202 exm-IND10-27727540 ATTATTTTTCAGATTATGGTCCCAGGGTTATGGTTATTGTTACTAAAAAA 37.1 10 27687535 diploid Homo sapiens 1000genomes 0 PLUS TTCAAAAATTTTAGTACAGTTTTCCAGTTTTTGCCTAACATCTTTATCCCAGTAGTCAAC[-/T]TTTTTTAGTAACAATAACCATAACCCTGGGACCATAATCTGAAAAATAATTCTCCTCTAC TTCAAAAATTTTAGTACAGTTTTCCAGTTTTTGCCTAACATCTTTATCCCAGTAGTCAAC[-/T]TTTTTTAGTAACAATAACCATAACCCTGGGACCATAATCTGAAAAATAATTCTCCTCTAC 621 3 -
exm-IND10-74560589-0_P_F_1990486573 exm-IND10-74560589 PLUS [D/I] 66776594 exm-IND10-74560589 GGCCCCTATACTCAGCAACAGAATGGGACTTTCCCATTCTGGCTGCCCCC 37.1 10 74890584 diploid Homo sapiens 1000genomes 0 PLUS GCCCTGAAGAGAAAGGGCCCCTATACTCAGCAACAGAATGGGACTTTCCCATTCTGGCTG[-/C]CCCCCTAAGTTAGCCATCTCCCACCAACTGATTAAGGAGTGGGTGGAAAAACAGACCTGT GCCCTGAAGAGAAAGGGCCCCTATACTCAGCAACAGAATGGGACTTTCCCATTCTGGCTG[-/C]CCCCCTAAGTTAGCCATCTCCCACCAACTGATTAAGGAGTGGGTGGAAAAACAGACCTGT 621 3 +
exm-IND11-102094357-0_P_F_1990486575 exm-IND11-102094357 PLUS [D/I] 74681191 exm-IND11-102094357 CCCAGGTCCTACCATGTACTATGACTCTCTTGAGAAGACCTTACCATAGA 37.1 11 102589148 diploid Homo sapiens 1000genomes 0 PLUS GTGTTCGCCTATTCCCAGGTCCTACCATGTACTATGACTCTCTTGAGAAGACCTTACCAT[-/AG]AGATGGCCTGAATGCCATCGATGTCATCTTGAGGGAGTGAGTAGTTGCTGGTTTCCCTGA GTGTTCGCCTATTCCCAGGTCCTACCATGTACTATGACTCTCTTGAGAAGACCTTACCAT[-/AG]AGATGGCCTGAATGCCATCGATGTCATCTTGAGGGAGTGAGTAGTTGCTGGTTTCCCTGA 621 3 +
exm-IND11-60867390-0_M_R_1990486445 exm-IND11-60867390 MINUS [D/I] 35625203 exm-IND11-60867390 GCTGACATGAAGGTGCCCACCAGGGCACGGGCAATCTTCACCCCGCGGCC 37.1 11 61110815 diploid Homo sapiens 1000genomes 0 PLUS TGTTTTCTTTCCCTGATGCCCATTTTTCCCTTTTGGACTGCCACACTCTGGTATTGCAGA[-/G]GGCCGCGGGGTGAAGATTGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCACTGGAGATG TGTTTTCTTTCCCTGATGCCCATTTTTCCCTTTTGGACTGCCACACTCTGGTATTGCAGA[-/G]GGCCGCGGGGTGAAGATTGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCACTGGAGATG 621 3 -
exm-IND11-73463127-0_P_F_1990486580 exm-IND11-73463127 PLUS [I/D] 84623566 exm-IND11-73463127 GAGACTTCTGGTGGCAGGAGATGACTTCTGGTGGAGAGAGCTGGACCTCA 37.1 11 73785480 diploid Homo sapiens 1000genomes 0 PLUS GTGGAGGCAGGAGACTTCTGGTGGCAGGAGATGACTTCTGGTGGAGAGAGCTGGACCTCA[-/T]CATTCCTTCTGGGGAGCTGCTCAGACTCACTGTGGCTGCTGCAGTCCATGGAGTCCAGCT GTGGAGGCAGGAGACTTCTGGTGGCAGGAGATGACTTCTGGTGGAGAGAGCTGGACCTCA[-/T]CATTCCTTCTGGGGAGCTGCTCAGACTCACTGTGGCTGCTGCAGTCCATGGAGTCCAGCT 621 3 +
exm-IND12-4584372-0_P_F_1990486581 exm-IND12-4584372 PLUS [I/D] 40692196 exm-IND12-4584372 CTTACTTTGCCTCCGCAGTATACACGTACATCCAAAGCCGGTTCTACCGA 37.1 12 4714112 diploid Homo sapiens 1000genomes 0 PLUS CGAGGTTTCTCTTACTTTGCCTCCGCAGTATACACGTACATCCAAAGCCGGTTCTACCGA[-/T]CCCCAGAAGTGATCCTGGGCCACCCCTACGACGTGGCCATTGACATGTGGAGCCTGGGCT CGAGGTTTCTCTTACTTTGCCTCCGCAGTATACACGTACATCCAAAGCCGGTTCTACCGA[-/T]CCCCAGAAGTGATCCTGGGCCACCCCTACGACGTGGCCATTGACATGTGGAGCCTGGGCT 621 3 +
exm-IND12-46829523-0_M_R_1990486450 exm-IND12-46829523 MINUS [I/D] 60769529 exm-IND12-46829523 CTATGTGAAAAACTGACTGTTCTGTGCTCAGCTCCAGGAACTCTAAAAAC 37.1 12 48543257 diploid Homo sapiens 1000genomes 0 PLUS GCCCTTCACTGCATCGGGGAGATACTGGAGTCCCAGGCTACGGCGCACGGCATAGCGAGC[-/GAGT]GTTTTTAGAGTTCCTGGAGCTGAGCACAGAACAGTCAGTTTTTCACATAGCTGCGGGTCT GCCCTTCACTGCATCGGGGAGATACTGGAGTCCCAGGCTACGGCGCACGGCATAGCGAGC[-/GAGT]GTTTTTAGAGTTCCTGGAGCTGAGCACAGAACAGTCAGTTTTTCACATAGCTGCGGGTCT 621 3 -
exm-IND12-49036005-0_P_F_1990486582 exm-IND12-49036005 PLUS [I/D] 38775162 exm-IND12-49036005 AGATCTCGTATTATCTTCAGAGAGAGCTCCTTTTCTGCTTCACTTGTCTC 37.1 12 50749739 diploid Homo sapiens 1000genomes 0 PLUS TTCGTTACTGAGATCTCGTATTATCTTCAGAGAGAGCTCCTTTTCTGCTTCACTTGTCTC[-/AT]GTGCATACACAGTGGAACTTTGGAAGTTAACACATTTTAATTCATCATTTAGCATACTCA TTCGTTACTGAGATCTCGTATTATCTTCAGAGAGAGCTCCTTTTCTGCTTCACTTGTCTC[-/AT]GTGCATACACAGTGGAACTTTGGAAGTTAACACATTTTAATTCATCATTTAGCATACTCA 621 3 +
exm-IND12-51232970-0_P_F_1990486584 exm-IND12-51232970 PLUS [D/I] 73683858 exm-IND12-51232970 CCTCCACTCTTCCCGCTGCCACTGGCCACATTGAGGCTCCGGACACCCCC 37.1 12 52946704 diploid Homo sapiens 1000genomes 0 PLUS CGGCCAAATCCATAGCCTCCACTCTTCCCGCTGCCACTGGCCACATTGAGGCTCCGGACA[-/C]CCCCCAGGCTGTAGAGGCTCCGGCTGCCAAAGCCCCCACTGAGCCCTTTGCTCCCTGCCC CGGCCAAATCCATAGCCTCCACTCTTCCCGCTGCCACTGGCCACATTGAGGCTCCGGACA[-/C]CCCCCAGGCTGTAGAGGCTCCGGCTGCCAAAGCCCCCACTGAGCCCTTTGCTCCCTGCCC 621 3 +
exm-IND12-54361914-0_M_R_1990486452 exm-IND12-54361914 MINUS [I/D] 72716982 exm-IND12-54361914 TCTTGCTCTCCATCTTGCGGTTGCTCTTGGGAGTCAGCACGGCCATCAGG 37.1 12 56075648 diploid Homo sapiens 1000genomes 0 PLUS TGCCCCTGCACCTCATGGCTCTGCTGGGCTGCTGGCAGCCCCTGTGCAAAAGCTACTTCC[-/CCTA]CCTGATGGCCGTGCTGACTCCCAAGAGCAACCGCAAGATGGAGAGCAAGAAACGGGAGCT TGCCCCTGCACCTCATGGCTCTGCTGGGCTGCTGGCAGCCCCTGTGCAAAAGCTACTTCC[-/CCTA]CCTGATGGCCGTGCTGACTCCCAAGAGCAACCGCAAGATGGAGAGCAAGAAACGGGAGCT 621 3 -
exm-IND12-67380833-0_P_F_1990486586 exm-IND12-67380833 PLUS [D/I] 69628276 exm-IND12-67380833 AGTAAAATAGTGAGTCGAGCAACACCTGGACTTCAAAAATTTTCAAAAAC 37.1 12 69094567 diploid Homo sapiens 1000genomes 0 PLUS TGAATATACTGAGTAAAATAGTGAGTCGAGCAACACCTGGACTTCAAAAATTTTCAAAAA[-/C]CAGCCAGTATGCTCTGGCTTCTTCAACAGGAGATGGTCACATGGAGGCTGCTGGCTTCTT TGAATATACTGAGTAAAATAGTGAGTCGAGCAACACCTGGACTTCAAAAATTTTCAAAAA[-/C]CAGCCAGTATGCTCTGGCTTCTTCAACAGGAGATGGTCACATGGAGGCTGCTGGCTTCTT 621 3 +
exm-IND12-83947680-0_M_R_1990486453 exm-IND12-83947680 MINUS [I/D] 39632233 exm-IND12-83947680 AAAAAAATAAGCATTGACTTTCTTTTTTTAGGTTCTTGGACTTTTATTCA 37.1 12 85423550 diploid Homo sapiens 1000genomes 0 PLUS TACATACCAAAAGCTGTTAAAAAATTATTTCTATCTAATAAGAGCCATGCACCAAATCCC[-/A]TGAATAAAAGTCCAAGAACCTAAAAAAAGAAAGTCAATGCTTATTTTTTTGTAATTGCCT TACATACCAAAAGCTGTTAAAAAATTATTTCTATCTAATAAGAGCCATGCACCAAATCCC[-/A]TGAATAAAAGTCCAAGAACCTAAAAAAAGAAAGTCAATGCTTATTTTTTTGTAATTGCCT 621 3 -
exm-IND12-8887191-0_M_R_1990486455 exm-IND12-8887191 MINUS [D/I] 87785930 exm-IND12-8887191 CCCCGTTTCCCGGTCTCACATAGTAGGAGAAGCTGATCTCTTGGTCAGGG 37.1 12 8995925 diploid Homo sapiens 1000genomes 0 PLUS TTGAAATGTGGCCAGCCCCAGGAAGTGCTGGTGGATTATTACATCGACCCGGCCGATGCA[-/AG]CCCTGACCAAGAGATCAGCTTCTCCTACTATGTGAGACCGGGAAACGGGGACGGGTGAGA TTGAAATGTGGCCAGCCCCAGGAAGTGCTGGTGGATTATTACATCGACCCGGCCGATGCA[-/AG]CCCTGACCAAGAGATCAGCTTCTCCTACTATGTGAGACCGGGAAACGGGGACGGGTGAGA 621 3 -
exm-IND13-47565698-0_P_F_1990486590 exm-IND13-47565698 PLUS [I/D] 1791442 exm-IND13-47565698 AACTTCACAGATCACAGAATCAGTACACATAACTACCTCTGAGTGAACAC 37.1 13 48667698 diploid Homo sapiens 1000genomes 0 PLUS GAGACTGACAAACTTCACAGATCACAGAATCAGTACACATAACTACCTCTGAGTGAACAC[-/AT]GAGACCTTTCTGGAAGCCAGTCACACCACCAGAGCAGCTTCATTCTGTGAAGAAGTTCCA GAGACTGACAAACTTCACAGATCACAGAATCAGTACACATAACTACCTCTGAGTGAACAC[-/AT]GAGACCTTTCTGGAAGCCAGTCACACCACCAGAGCAGCTTCATTCTGTGAAGAAGTTCCA 621 3 +

Total number of rows: 247893

Table truncated, full table size 106822 Kbytes.




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Supplementary file Size Download File type/resource
GPL18544_humanexome-12v1_a.csv.gz 21.6 Mb (ftp)(http) CSV
GPL18544_humanexome-12v1_a_gene_annotation.txt.gz 3.9 Mb (ftp)(http) TXT

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